School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing, 210046, China; State Key Laboratory of Drug Research; Drug Discovery and Design Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.
Department of Chemistry - BMC, Uppsala University, SE-751 23, Uppsala, Sweden.
Comput Biol Med. 2024 Apr;172:108209. doi: 10.1016/j.compbiomed.2024.108209. Epub 2024 Feb 28.
Halogenation is an indispensable method in the structural modification of lead compounds. It is known to increase lipophilicity and is hence used to improve membrane permeability and thus bioavailability. In this study, we compare the water solubility (logS) of organohalogen compounds and their non-halogenated parent compounds using the molecular matched pair (MMP) analysis method. Unexpectedly, 19.9% of the compounds increased their water solubility upon halogenation. Iodination was observed to have the greatest effect on solubility, followed by chlorination, bromination, and fluorination. Introducing amino, hydroxyl and carboxyl groups into organohalogens improves their aqueous solubilities, whereas introducing a trifluoromethyl group has the opposite effect. According to our quantum chemical calculations, the increased water solubility upon halogenation is, at least partially, attributed to an increased polarity and polarizability. These results improve our understanding of the influence of halogenation on bioactivity.
卤化是改变铅化合物结构的不可或缺的方法。众所周知,卤化可以增加亲脂性,从而提高膜通透性和生物利用度。在这项研究中,我们使用分子匹配对(MMP)分析方法比较了有机卤代化合物与其非卤代母体化合物的水溶解度(logS)。出乎意料的是,19.9%的化合物在卤化后增加了其水溶解度。观察到碘化对溶解度的影响最大,其次是氯化、溴化和氟化。在有机卤代物中引入氨基、羟基和羧基可提高其水溶解度,而引入三氟甲基则有相反的效果。根据我们的量子化学计算,卤化后水溶解度的增加至少部分归因于极性和极化率的增加。这些结果提高了我们对卤化对生物活性影响的理解。