Ibrahim Mahmoud A A, Mahmoud Asmaa M M, Shehata Mohammed N I, Saeed Rehab R A, Moussa Nayra A M, Sayed Shaban R M, Abd El-Rahman Mohamed Khaled, Shoeib Tamer
Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia 61519, Egypt.
School of Health Sciences, University of KwaZulu-Natal, Westville Campus, Durban 4000, South Africa.
ACS Omega. 2024 Feb 23;9(9):10391-10399. doi: 10.1021/acsomega.3c08178. eCollection 2024 Mar 5.
σ-Hole site-based interactions in the trigonal bipyramidal geometrical structure of hypervalent pnicogen, halogen, and aerogen-bearing molecules with pyridine and NCH Lewis bases (LBs) were comparatively examined. In this respect, the ZF···, XFO···, and AeFO···LB complexes (where Z = As, Sb; X = Br, I; Ae = Kr, Xe; and LB = pyridine and NCH) were investigated. The electrostatic potential (EP) analysis affirmations outlined the occurrence of σ-holes on the systems under consideration with disparate magnitudes that increased according to the following order: AeFO < XFO < ZF. In line with EP outcomes, the proficiency of σ-hole site-based interactions increased as the atomic size of the central atom increased with a higher favorability for the pyridine-based complexes over NCH-based ones. The interaction energy showed the most favorable negative values of -35.97, -44.53, and -56.06 kcal/mol for the XeFO···, IFO···, and SbF···pyridine complexes, respectively. The preferentiality pattern of the studied interactions could be explained as a consequence of (i) the dramatic rearrangement of ZF molecules from the trigonal bipyramid geometry to the square pyramidal one, (ii) the significant and tiny deformation energy in the case of the interaction of XFO molecules with pyridine and NCH, respectively, and (iii) the absence of geometrical deformation within the AeFO···pyridine and ···NCH complexes other than the XeFO···pyridine one. Quantum theory of atoms in molecules and noncovalent interaction index findings reveal the partially covalent nature of most of the investigated interactions. Symmetry-adapted perturbation theory affirmations declared that the electrostatic component was the driving force beyond the occurrence of the considered interactions. The obtained findings will help in improving our understanding of the effect of geometrical deformation on intermolecular interactions.
对含高价磷族元素、卤素和稀有气体的分子与吡啶和NCH路易斯碱(LBs)在三角双锥几何结构中基于σ-空穴位点的相互作用进行了比较研究。在这方面,研究了ZF···、XFO···和AeFO···LB配合物(其中Z = As、Sb;X = Br、I;Ae = Kr、Xe;LB = 吡啶和NCH)。静电势(EP)分析证实,在所研究的体系中存在σ-空穴,其大小各异,按照以下顺序增加:AeFO < XFO < ZF。与EP结果一致,基于σ-空穴位点的相互作用能力随着中心原子原子尺寸的增加而增强,且对基于吡啶的配合物的偏好高于基于NCH的配合物。相互作用能分别显示XeFO···、IFO···和SbF···吡啶配合物的最有利负值为-35.97、-44.53和-56.06 kcal/mol。所研究相互作用的优先模式可以解释为以下结果:(i)ZF分子从三角双锥几何结构显著重排为四方锥几何结构;(ii)XFO分子与吡啶和NCH相互作用时分别有显著和微小的变形能;(iii)除XeFO···吡啶配合物外,AeFO···吡啶和···NCH配合物中不存在几何变形。分子中原子的量子理论和非共价相互作用指数结果表明,大多数所研究的相互作用具有部分共价性质。对称适配微扰理论证实,静电成分是所考虑相互作用发生的驱动力。所得结果将有助于提高我们对几何变形对分子间相互作用影响的理解。