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开发针对多种病原体的基于废水的监测方案:芬兰的 WastPan 项目。

Developing wastewater-based surveillance schemes for multiple pathogens: The WastPan project in Finland.

机构信息

Finnish Institute for Health and Welfare, Department of Health Security, Kuopio and Helsinki, Finland.

Tampere University, Faculty of Medicine and Health Technology, Tampere, Finland.

出版信息

Sci Total Environ. 2024 May 20;926:171401. doi: 10.1016/j.scitotenv.2024.171401. Epub 2024 Mar 10.

DOI:10.1016/j.scitotenv.2024.171401
PMID:38467259
Abstract

Wastewater comprises multiple pathogens and offers a potential for wastewater-based surveillance (WBS) to track the prevalence of communicable diseases. The Finnish WastPan project aimed to establish wastewater-based pandemic preparedness for multiple pathogens (viruses, bacteria, parasites, fungi), including antimicrobial resistance (AMR). This article outlines WastPan's experiences in this project, including the criteria for target selection, sampling locations, frequency, analysis methods, and results communication. Target selection relied on epidemiological and microbiological evidence and practical feasibility. Within the WastPan framework, wastewater samples were collected between 2021 and 2023 from 10 wastewater treatment plants (WWTPs) covering 40 % of Finland's population. WWTP selection was validated for reported cases of Extended Spectrum Beta-lactamase-producing bacterial pathogens (Escherichia coli and Klebsiella pneumoniae) from the National Infectious Disease Register. The workflow included 24-h composite influent samples, with one fraction for culture-based analysis (bacteria and fungi) and the rest of the sample was reserved for molecular analysis (viruses, bacteria, antibiotic resistance genes, and parasites). The reproducibility of the monitoring workflow was assessed for SARS-CoV-2 through inter-laboratory comparisons using the N2 and N1 assays. Identical protocols were applied to same-day samples, yielding similar positivity trends in the two laboratories, but the N2 assay achieved a significantly higher detection rate (Laboratory 1: 91.5 %; Laboratory 2: 87.4 %) than the N1 assay (76.6 %) monitored only in Laboratory 2 (McNemar, p < 0.001 Lab 1, = 0.006 Lab 2). This result indicates that the selection of monitoring primers and assays may impact monitoring sensitivity in WBS. Overall, the current study recommends that the selection of sampling frequencies and population coverage of the monitoring should be based on pathogen-specific epidemiological characteristics. For example, pathogens that are stable over time may need less frequent annual sampling, while those that are occurring across regions may require reduced sample coverage. Here, WastPan successfully piloted WBS for monitoring multiple pathogens, highlighting the significance of one-litre community composite wastewater samples for assessing community health. The infrastructure established for COVID-19 WBS is valuable for monitoring various pathogens. The prioritization of the monitoring targets optimizes resource utilization. In the future legislative support in target selection, coverage determination, and sustained funding for WBS is recomended.

摘要

污水包含多种病原体,为基于污水的监测(WBS)跟踪传染病的流行提供了潜力。芬兰的 WastPan 项目旨在建立针对多种病原体(病毒、细菌、寄生虫、真菌)的基于污水的大流行准备工作,包括抗微生物药物耐药性(AMR)。本文概述了 WastPan 在该项目中的经验,包括目标选择、采样地点、频率、分析方法和结果传播的标准。目标选择依赖于流行病学和微生物学证据以及实际可行性。在 WastPan 框架内,2021 年至 2023 年期间,从覆盖芬兰 40%人口的 10 个污水处理厂(WWTP)收集了污水样本。WWTP 的选择是基于国家传染病登记册中报告的产Extended Spectrum Beta-lactamase 细菌病原体(大肠杆菌和肺炎克雷伯菌)的病例进行验证的。该工作流程包括 24 小时综合进水样本,其中一部分用于基于培养的分析(细菌和真菌),其余部分用于分子分析(病毒、细菌、抗生素耐药基因和寄生虫)。通过使用 N2 和 N1 检测的实验室间比较,评估了 SARS-CoV-2 监测工作流程的可重复性。相同的方案应用于当天的样本,在两个实验室中产生了相似的阳性趋势,但 N2 检测的检出率明显高于仅在实验室 2 中监测的 N1 检测(实验室 1:91.5%;实验室 2:87.4%)(McNemar,p<0.001 实验室 1,=0.006 实验室 2)。这一结果表明,监测引物和检测的选择可能会影响 WBS 的监测灵敏度。总的来说,本研究建议应根据病原体的特定流行病学特征来选择监测的采样频率和人口覆盖率。例如,随时间稳定的病原体可能需要较少的年度采样频率,而在不同地区发生的病原体可能需要减少样本覆盖率。在这里,WastPan 成功地为监测多种病原体试点了 WBS,强调了一升社区综合污水样本在评估社区健康方面的重要性。为 COVID-19 WBS 建立的基础设施对监测各种病原体具有价值。监测目标的优先级优化了资源利用。在未来的立法中,建议支持目标选择、覆盖范围确定和对 WBS 的持续资金投入。

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