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一种基于深度学习网络利用乳房超声检测水牛乳腺炎的新方法。

A New Method to Detect Buffalo Mastitis Using Udder Ultrasonography Based on Deep Learning Network.

作者信息

Zhang Xinxin, Li Yuan, Zhang Yiping, Yao Zhiqiu, Zou Wenna, Nie Pei, Yang Liguo

机构信息

National Center for International Research on Animal Genetics, Breeding and Reproduction (NCIRAGBR), Ministry of Science and Technology of the People's Republic of China, Huazhong Agricultural University, Wuhan 430070, China.

Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.

出版信息

Animals (Basel). 2024 Feb 23;14(5):707. doi: 10.3390/ani14050707.

Abstract

Mastitis is one of the most predominant diseases with a negative impact on ranch products worldwide. It reduces milk production, damages milk quality, increases treatment costs, and even leads to the premature elimination of animals. In addition, failure to take effective measures in time will lead to widespread disease. The key to reducing the losses caused by mastitis lies in the early detection of the disease. The application of deep learning with powerful feature extraction capability in the medical field is receiving increasing attention. The main purpose of this study was to establish a deep learning network for buffalo quarter-level mastitis detection based on 3054 ultrasound images of udders from 271 buffaloes. Two data sets were generated with thresholds of somatic cell count (SCC) set as 2 × 10 cells/mL and 4 × 10 cells/mL, respectively. The udders with SCCs less than the threshold value were defined as healthy udders, and otherwise as mastitis-stricken udders. A total of 3054 udder ultrasound images were randomly divided into a training set (70%), a validation set (15%), and a test set (15%). We used the EfficientNet_b3 model with powerful learning capabilities in combination with the convolutional block attention module (CBAM) to train the mastitis detection model. To solve the problem of sample category imbalance, the PolyLoss module was used as the loss function. The training set and validation set were used to develop the mastitis detection model, and the test set was used to evaluate the network's performance. The results showed that, when the SCC threshold was 2 × 10 cells/mL, our established network exhibited an accuracy of 70.02%, a specificity of 77.93%, a sensitivity of 63.11%, and an area under the receiver operating characteristics curve (AUC) of 0.77 on the test set. The classification effect of the model was better when the SCC threshold was 4 × 10 cells/mL than when the SCC threshold was 2 × 10 cells/mL. Therefore, when SCC ≥ 4 × 10 cells/mL was defined as mastitis, our established deep neural network was determined as the most suitable model for farm on-site mastitis detection, and this network model exhibited an accuracy of 75.93%, a specificity of 80.23%, a sensitivity of 70.35%, and AUC 0.83 on the test set. This study established a 1/4 level mastitis detection model which provides a theoretical basis for mastitis detection in buffaloes mostly raised by small farmers lacking mastitis diagnostic conditions in developing countries.

摘要

乳腺炎是对全球牧场产品产生负面影响的最主要疾病之一。它会降低牛奶产量,损害牛奶质量,增加治疗成本,甚至导致动物过早淘汰。此外,未能及时采取有效措施会导致疾病广泛传播。减少乳腺炎造成损失的关键在于早期发现该疾病。深度学习在医学领域具有强大的特征提取能力,其应用正受到越来越多的关注。本研究的主要目的是基于271头水牛的3054张乳房超声图像建立一个用于水牛四分位水平乳腺炎检测的深度学习网络。分别以体细胞计数(SCC)阈值为2×10⁵个/毫升和4×10⁵个/毫升生成了两个数据集。SCC低于阈值的乳房被定义为健康乳房,否则为患乳腺炎的乳房。总共3054张乳房超声图像被随机分为训练集(70%)、验证集(15%)和测试集(15%)。我们使用具有强大学习能力的EfficientNet_b3模型结合卷积块注意力模块(CBAM)来训练乳腺炎检测模型。为了解决样本类别不平衡问题,使用PolyLoss模块作为损失函数。训练集和验证集用于开发乳腺炎检测模型,测试集用于评估网络性能。结果表明,当SCC阈值为2×10⁵个/毫升时,我们建立的网络在测试集上的准确率为70.02%,特异性为77.93%,灵敏度为63.11%,受试者操作特征曲线下面积(AUC)为0.77。当SCC阈值为4×10⁵个/毫升时,模型的分类效果优于SCC阈值为2×10⁵个/毫升时。因此,当将SCC≥4×10⁵个/毫升定义为乳腺炎时,我们建立的深度神经网络被确定为最适合农场现场乳腺炎检测的模型,该网络模型在测试集上的准确率为75.93%,特异性为80.23%,灵敏度为70.35%,AUC为0.83。本研究建立了一个四分位水平的乳腺炎检测模型,为发展中国家大多由缺乏乳腺炎诊断条件的小农户饲养的水牛的乳腺炎检测提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24d4/10931404/5fb904aa5513/animals-14-00707-g001.jpg

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