Issa Ali Abdullah, Kamel Maryam Dhary, El-Sayed Doaa S
Department of Applied Sciences, University of Technology, Baghdad, Iraq.
Chemistry Department, Faculty of Science, Alexandria University, Alexandria, Egypt.
J Mol Model. 2024 Mar 16;30(4):106. doi: 10.1007/s00894-024-05896-2.
Electronic durable behavior on the material surface was accompanied by a class of antipsychotic drugs (APD) to describe the surface modification in the designed adsorption model. Hierarchically Zn-MOF system was utilized for estimating its capacity for drug molecule removal. Geometrically optimized strategy on the studied systems was performed using DFT/GGA/PBE. FMOs analysis was depicted based on the same level of calculations, and molecular electrostatic potential surface (MEP) was generated for unadsorbed and adsorbed systems to illustrate the variation in the surface-active sites. By interpreting the electronic density of states (DOS), the atomic orbital can be identified as a major or minor electronic distribution by PDOS graph. Adsorption locating behavior was considered to detect the significant surface interaction mode between APD and Zn-MOF surface based on lower adsorption energy. The stability of the adsorbed model was best described through dynamic simulation analysis with time through elevated temperatures. The non-covalent interactions were described using RDG/NCI analysis to show the major favorable surface interaction predicting the highly stable adsorption system.
The most accurate geometrical computations were performed using the materials studio software followed by surface cleavage and vacuum slab generation. The first principle of DFT was used to apply CASTEP module with GGA/PBE method for band structure and DOS calculations. Three systems of antipsychotic drugs were computationally studied using CASTEP simulation package and adsorbed on an optimized Zn-MOF surface. Adsorption locator module predicted the preferred adsorption mechanistic models, in which the first model was arranged to be more stable, to confirm the occurrence of some interactions in the adsorption mechanism.
在设计的吸附模型中,一类抗精神病药物(APD)伴随着材料表面的电子持久行为来描述表面改性。利用分层的Zn-MOF系统来评估其去除药物分子的能力。使用DFT/GGA/PBE对研究系统进行几何优化策略。基于相同的计算水平进行前线分子轨道(FMOs)分析,并为未吸附和吸附系统生成分子静电势表面(MEP),以说明表面活性位点的变化。通过解释电子态密度(DOS),可以通过投影态密度(PDOS)图将原子轨道识别为主要或次要的电子分布。基于较低的吸附能,考虑吸附定位行为以检测APD与Zn-MOF表面之间重要的表面相互作用模式。通过在升高温度下随时间进行动态模拟分析,最好地描述了吸附模型的稳定性。使用RDG/NCI分析来描述非共价相互作用,以显示预测高度稳定吸附系统的主要有利表面相互作用。
使用材料工作室软件进行最精确的几何计算,随后进行表面切割和真空平板生成。利用DFT的第一原理,应用CASTEP模块并采用GGA/PBE方法进行能带结构和DOS计算。使用CASTEP模拟包对三种抗精神病药物系统进行计算研究,并将其吸附在优化的Zn-MOF表面上。吸附定位器模块预测了优选的吸附机理模型,其中第一个模型被安排得更稳定,以确认吸附机理中某些相互作用的发生。