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转录组证据表明存在第四种微小核病毒(微小核病毒科):核质大 DNA 病毒(NCLDVs)中快速增长的家族。

Transcriptomic evidence of a fourth mininucleovirus (Mininucleoviridae): A rapidly growing family among the Nucleo-Cytoplasmic Large DNA viruses (NCLDVs).

机构信息

School of Health and Life Sciences, Teesside University, Middlesbrough TS1 3BX, UK; National Horizons Centre, Teesside University, Darlington DL1 1HG, UK.

School of Health and Life Sciences, Teesside University, Middlesbrough TS1 3BX, UK; National Horizons Centre, Teesside University, Darlington DL1 1HG, UK.

出版信息

J Invertebr Pathol. 2024 Jun;204:108096. doi: 10.1016/j.jip.2024.108096. Epub 2024 Mar 16.

Abstract

The Mininucleoviridae are crustacean-infecting viruses thought to drive mortality across aquatic biomes. Three have been characterised from Carcinus maenas, Panulirus argus, and Dikerogammarus haemobaphes. We screened 202 SRA datasets (NCBI) for novel mininucleoviruses from 44 amphipod species. Three metatranscriptome datasets from Gammarus lacustris contained sequences with similarity to Dikerogammarus haemobaphes mininucleovirus. Assembly resulted in 19 transcripts, 16 were putatively polycistronic. The putative Gammarus lacustris mininucleovirus shares 46 homologues with other mininucleoviruses (similarity range: 24.07 - 78.2 %). The transcripts from this putative virus highlight its likely association with the Mininucleoviridae.

摘要

Mininucleoviridae 是感染甲壳类动物的病毒,被认为会导致水生生物群落中的死亡率。已有三种病毒从 Carcinus maenas、Panulirus argus 和 Dikerogammarus haemobaphes 中得到了描述。我们从 44 种端足目动物的 202 个 SRA 数据集(NCBI)中筛选了新型的 Mininucleoviridae 病毒。三个来自 Gammarus lacustris 的宏转录组数据集包含与 Dikerogammarus haemobaphes mininucleovirus 相似的序列。组装得到了 19 个转录本,其中 16 个被推测为多顺反子。与其他 Mininucleoviridae 相比,推测的 Gammarus lacustris mininucleovirus 有 46 个同源物(相似度范围:24.07-78.2%)。来自这种推定病毒的转录本突出了它与 Mininucleoviridae 的可能关联。

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