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环状RNA的翻译:翻译产物的功能及相关生物信息学方法

Translation of Circular RNAs: Functions of Translated Products and Related Bioinformatics Approaches.

作者信息

Hwang Jae Yeon, Kook Tae Lim, Paulus Sydney M, Park Juw Won

机构信息

Department of Computer Science and Engineering, University of Louisville, Louisville, KY 40292, USA.

KY INBRE Bioinformatics Core, University of Louisville, Louisville, KY 40292, USA.

出版信息

Curr Bioinform. 2024;19(1):3-13. doi: 10.2174/1574893618666230505101059. Epub 2023 Oct 3.

Abstract

Over the past two decades, studies have discovered a special form of alternative splicing (AS) that produces a circular form of RNA. This stands in contrast to normal AS, which produces a linear form of RNA. Although these circRNAs have garnered considerable attention in the scientific community for their biogenesis and functions, the focus of these studies has been on the regulatory role of circRNAs with the assumption that circRNAs are non-coding. As non-coding RNAs, they may regulate mRNA transcription, tumor initiation, and translation by sponging miRNAs and RNA-binding proteins (RBPs). In addition to these regulatory roles of circRNAs, however, recent studies have provided strong evidence for their translation. The translation of circRNAs is expected to have an important role in promoting cancer cell growth and activating molecular pathways related to cancer development. In some cases, the translation of circRNAs is shown to be efficiently driven by an internal ribosome entry site (IRES). The development of a computational tool for identifying and characterizing the translation of circRNAs using high-throughput sequencing and IRES increases identifiable proteins translated from circRNAs. In turn, it has a substantial impact on helping researchers understand the functional role of proteins derived from circRNAs. New web resources for aggregating, cataloging, and visualizing translational information of circRNAs derived from previous studies have been developed. In this paper, general concepts of circRNA, circRNA biogenesis, translation of circRNA, and existing circRNA tools and databases are summarized to provide new insight into circRNA studies.

摘要

在过去二十年中,研究发现了一种特殊形式的可变剪接(AS),它能产生环状RNA。这与产生线性RNA的正常可变剪接形成对比。尽管这些环状RNA因其生物发生和功能在科学界备受关注,但这些研究的重点一直是环状RNA的调控作用,并假设环状RNA是非编码的。作为非编码RNA,它们可能通过结合微小RNA(miRNA)和RNA结合蛋白(RBP)来调节mRNA转录、肿瘤起始和翻译。然而,除了环状RNA的这些调控作用外,最近的研究为它们的翻译提供了有力证据。环状RNA的翻译有望在促进癌细胞生长和激活与癌症发展相关的分子途径中发挥重要作用。在某些情况下,环状RNA的翻译被证明可由内部核糖体进入位点(IRES)有效驱动。利用高通量测序和IRES开发用于识别和表征环状RNA翻译的计算工具,增加了可识别的由环状RNA翻译的蛋白质。反过来,这对帮助研究人员理解源自环状RNA的蛋白质的功能作用有重大影响。已经开发了新的网络资源,用于汇总、编目和可视化先前研究中环状RNA的翻译信息。本文总结了环状RNA的一般概念、环状RNA生物发生、环状RNA翻译以及现有的环状RNA工具和数据库,为环状RNA研究提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8d6/10947221/fc63c3c86df1/nihms-1941571-f0001.jpg

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