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通过使用无能量导数目标函数的变分反应路径优化来定位过渡态

Locating Transition States by Variational Reaction Path Optimization with an Energy-Derivative-Free Objective Function.

作者信息

Koda Shin-Ichi, Saito Shinji

机构信息

Department of Theoretical and Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki, Aichi 444-8585, Japan.

School of Physical Sciences, The Graduate University for Advanced Studies, Myodaiji, Okazaki, Aichi 444-8585, Japan.

出版信息

J Chem Theory Comput. 2024 Apr 9;20(7):2798-2811. doi: 10.1021/acs.jctc.3c01246. Epub 2024 Mar 21.

Abstract

Locating transition states is essential for understanding molecular reactions. We propose a double-ended transition state search method by revisiting a variational reaction path optimization method known as the MaxFlux method. Although its original purpose is to add temperature effects to reaction paths, we conversely let the temperature approach zero to obtain an asymptotically exact minimum energy path and its corresponding transition state in variational formalism with an energy-derivative-free objective function. Using several numerical techniques to directly optimize the objective function, the present method reliably finds transition states with low computational cost. In particular, only three force evaluations per iteration are sufficient. This is confirmed on a variety of molecular reactions where the nudged elastic band method often fails. The present method is implemented in Python using the Atomic Simulation Environment and is available on GitHub.

摘要

确定过渡态对于理解分子反应至关重要。我们通过重新审视一种称为MaxFlux方法的变分反应路径优化方法,提出了一种双端过渡态搜索方法。尽管其最初目的是将温度效应添加到反应路径中,但我们反过来让温度趋近于零,以便在具有无能量导数目标函数的变分形式中获得渐近精确的最小能量路径及其相应的过渡态。通过使用几种数值技术直接优化目标函数,本方法能够以低计算成本可靠地找到过渡态。特别是,每次迭代仅需三次力评估就足够了。这在多种分子反应中得到了证实,而在这些反应中,推挤弹性带方法常常失效。本方法使用原子模拟环境在Python中实现,可在GitHub上获取。

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