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开发和鉴定非洲油桃木(麻疯树科)核微卫星标记。

Development and characterization of nuclear microsatellite markers for the African walnut Coula edulis Baill (Coulaceae).

机构信息

Evolutionary Biology and Ecology Unit, CP 160/12, Faculté des Sciences, Université Libre de Bruxelles, Av. F. D. Roosevelt 50, Brussels, B-1050, Belgium.

Laboratoire de Botanique Systématique et d'Ecologie, Département des Sciences Biologiques, Ecole Normale Supérieure, Université de Yaoundé I, B.P. 047, Yaounde, Cameroon.

出版信息

Mol Biol Rep. 2024 Mar 23;51(1):438. doi: 10.1007/s11033-024-09373-0.

Abstract

PREMISE OF THE STUDY

Coula edulis Baill (Coulaceae) is a common tree species in the Guineo-Congolian forests producing an edible fruit known as African walnut, which is an important food and income resource for rural populations. However, the species suffers from a deficit of natural regeneration. We developed here nuclear microsatellite markers for C. edulis to be able to study the genetic structure of its natural populations and gene flow.

METHODS AND RESULTS

A genomic library was obtained using the Illumina platform, and 21 polymorphic microsatellite loci were developed. The polymorphic microsatellites displayed eight to 22 alleles per locus (average: 14.2), with a mean expected heterozygosity ranging from 0.33 to 0.72 in five populations from Central and West Africa.

CONCLUSIONS

The high polymorphism of the nuclear microsatellite markers developed makes them useful to investigate gene flow and the organization of genetic diversity in C. edulis, and to assess whether particular genetic resources require conservation efforts.

摘要

研究前提

Coulais edulis Baill(山榄科)是一种在几内亚-刚果森林中常见的树种,其果实可食用,被称为非洲胡桃,是农村人口的重要食物和收入来源。然而,该物种自然繁殖不足。我们在这里开发了 Coulais edulis 的核微卫星标记,以能够研究其自然种群的遗传结构和基因流动。

方法和结果

使用 Illumina 平台获得了基因组文库,并开发了 21 个多态性微卫星位点。在来自中非和西非的五个群体中,每个位点显示出 8 到 22 个等位基因(平均:14.2),平均预期杂合度范围从 0.33 到 0.72。

结论

所开发的核微卫星标记的高度多态性使其可用于研究 Coulais edulis 的基因流动和遗传多样性的组织,并评估是否需要保护特定的遗传资源。

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