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探索宿主表观遗传酶作为内脏利什曼病的靶向疗法:KDM6B和ASH1L抑制剂的计算机辅助设计及体外疗效

Exploring host epigenetic enzymes as targeted therapies for visceral leishmaniasis: in silico design and in vitro efficacy of KDM6B and ASH1L inhibitors.

作者信息

Dutta Mukul, Qamar Tooba, Kushavah Unnati, Siddiqi Mohammad Imran, Kar Susanta

机构信息

Infectious Diseases & Immunology Division, CSIR-Indian Institute of Chemical Biology, 4 Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India.

Molecular Microbiology & Immunology Division, CSIR-Central Drug Research Institute, BS-10/1, Sector 10, Jankipuram Extension, Sitapur Road, Lucknow, 226031, India.

出版信息

Mol Divers. 2024 Dec;28(6):4403-4424. doi: 10.1007/s11030-024-10824-w. Epub 2024 Mar 24.

DOI:10.1007/s11030-024-10824-w
PMID:38522046
Abstract

In order to combat various infectious diseases, the utilization of host-directed therapies as an alternative to chemotherapy has gained a lot of attention in the recent past, since it bypasses the existing limitations of conventional therapies. The use of host epigenetic enzymes like histone lysine methyltransferases and lysine demethylases as potential drug targets has successfully been employed for controlling various inflammatory diseases like rheumatoid arthritis and acute leukemia. In our earlier study, we have already shown that the functional knockdown of KDM6B and ASH1L in the experimental model of visceral leishmaniasis has resulted in a significant reduction of organ parasite burden. Herein, we performed a high throughput virtual screening against KDM6B and ASH1L using > 53,000 compounds that were obtained from the Maybridge library and PubChem Database, followed by molecular docking to evaluate their docking score/Glide Gscore. Based on their docking scores, the selected inhibitors were later assessed for their in vitro anti-leishmanial efficacy. Out of all inhibitors designed against KDM6B and ASH1L, HTS09796, GSK-J4 and AS-99 particularly showed promising in vitro activity with IC < 5 µM against both extracellular promastigote and intracellular amastigote forms of L. donovani. In vitro drug interaction studies of these inhibitors further demonstrated their synergistic interaction with amphotericin-B and miltefosine. However, GSK-J4 makes an exception by displaying an in different mode of interaction with miltefosine. Collectively, our in silico and in vitro studies acted as a platform to identify the applicability of these inhibitors targeted against KDM6B and ASH1L for anti-leishmanial therapy.

摘要

为了对抗各种传染病,作为化疗的替代方法,宿主导向疗法的应用在最近受到了广泛关注,因为它绕过了传统疗法的现有局限性。使用组蛋白赖氨酸甲基转移酶和赖氨酸去甲基化酶等宿主表观遗传酶作为潜在的药物靶点,已成功用于控制类风湿性关节炎和急性白血病等各种炎症性疾病。在我们早期的研究中,我们已经表明,在内脏利什曼病实验模型中,KDM6B和ASH1L的功能敲低导致器官寄生虫负担显著降低。在此,我们使用从Maybridge库和PubChem数据库获得的超过53,000种化合物,对KDM6B和ASH1L进行了高通量虚拟筛选,随后进行分子对接以评估它们的对接分数/Glide G分数。根据对接分数,后来对所选抑制剂的体外抗利什曼原虫疗效进行了评估。在所有针对KDM6B和ASH1L设计的抑制剂中,HTS09796、GSK-J4和AS-99尤其显示出有前景的体外活性,对杜氏利什曼原虫的细胞外前鞭毛体和细胞内无鞭毛体形式的IC均<5 μM。这些抑制剂的体外药物相互作用研究进一步证明了它们与两性霉素B和米替福新的协同相互作用。然而,GSK-J4与米替福新的相互作用模式不同,是个例外。总的来说,我们的计算机模拟和体外研究为确定这些针对KDM6B和ASH1L的抑制剂在抗利什曼原虫治疗中的适用性提供了一个平台。

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