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链束花属复合体中的植物物种与不同的微生物群落相关联,这些群落在干旱条件下会变得更加相似。

Plant species within Streptanthoid Complex associate with distinct microbial communities that shift to be more similar under drought.

作者信息

Igwe Alexandria N, Pearse Ian S, Aguilar Jessica M, Strauss Sharon Y, Vannette Rachel L

机构信息

Entomology and Nematology University of California - Davis Davis California USA.

Department of Biological Sciences Virginia Tech Blacksburg Virginia USA.

出版信息

Ecol Evol. 2024 Mar 24;14(3):e11174. doi: 10.1002/ece3.11174. eCollection 2024 Mar.

Abstract

Prolonged water stress can shift rhizoplane microbial communities, yet whether plant phylogenetic relatedness or drought tolerance predicts microbial responses is poorly understood. To explore this question, eight members of the clade with varying affinity to serpentine soil were subjected to three watering regimes. Rhizoplane bacterial communities were characterized using 16S rRNA gene amplicon sequencing and we compared the impact of watering treatment, soil affinity, and plant species identity on bacterial alpha and diversity. We determined which taxa were enriched among drought treatments using DESeq2 and identified features of soil affinity using random forest analysis. We show that water stress has a greater impact on microbial community structure than soil affinity or plant identity, even within a genus. Drought reduced alpha diversity overall, but plant species did not strongly differentiate alpha diversity. Watering altered the relative abundance of bacterial genera within Proteobacteria, Firmicutes, Bacteroidetes, Planctomycetes, and Acidobacteria, which responded similarly in the rhizoplane of most plant species. In addition, bacterial communities were more similar when plants received less water. was identified as a feature of affinity to serpentine soil while , , , and were features associated with affinity to nonserpentine soils among . The homogenizing effect of drought on microbial communities and the increasing prevalence of Gram-negative bacteria across all plant species suggest that effects of water stress on root-associated microbiome structure may be predictable among closely related plant species that inhabit very different soil environments. The functional implications of observed changes in microbiome composition remain to be studied.

摘要

长期水分胁迫会改变根际微生物群落,但对于植物系统发育相关性或耐旱性是否能预测微生物反应,我们还知之甚少。为了探究这个问题,我们选取了对蛇纹石土壤亲和力不同的该分支的八个成员,对其进行了三种浇水处理。利用16S rRNA基因扩增子测序对根际细菌群落进行了表征,并比较了浇水处理、土壤亲和力和植物物种身份对细菌α多样性和多样性的影响。我们使用DESeq2确定了干旱处理中哪些分类群富集,并使用随机森林分析确定了土壤亲和力的特征。我们发现,即使在同一属内,水分胁迫对微生物群落结构的影响也比土壤亲和力或植物身份更大。干旱总体上降低了α多样性,但植物物种并未强烈区分α多样性。浇水改变了变形菌门、厚壁菌门、拟杆菌门、浮霉菌门和酸杆菌门内细菌属的相对丰度,大多数植物物种的根际对此反应相似。此外,当植物浇水较少时,细菌群落更为相似。被确定为对蛇纹石土壤亲和力的一个特征,而在中,、、和是与对非蛇纹石土壤亲和力相关的特征。干旱对微生物群落的同质化作用以及所有植物物种中革兰氏阴性菌的患病率增加表明,水分胁迫对根际微生物组结构的影响在栖息于非常不同土壤环境的近缘植物物种中可能是可预测的。微生物组组成变化的功能意义仍有待研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/00b5/10961476/bcc257d52d46/ECE3-14-e11174-g004.jpg

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