Alshammari Odeh Abdullah Odeh, Maisara Sawsan, Alshammari Badriah, Alshammari Maha Raghyan, Rakic Violeta, Dimitrić Marković Jasmina, Jevtovic Violeta, Dimić Dušan
Department of Chemistry, College of Science, University of Ha'il, Ha'il 81451, Saudi Arabia.
Department of Agriculture and Food Technology Prokuplje, Academy of Vocational Studies of South Serbia, 18400 Prokuplje, Serbia.
Molecules. 2024 Mar 8;29(6):1213. doi: 10.3390/molecules29061213.
Vanadium complexes have gained considerable attention as biologically active compounds. In this contribution, three previously reported dioxovanadium(V) complexes with pyridoxal semicarbazone, thiosemicarbazone, and S-methyl-iso-thiosemicarbazone ligands are theoretically examined. The intermolecular stabilization interactions within crystallographic structures were investigated by Hirshfeld surface analysis. These experimental structures were optimized at the B3LYP-D3BJ/6-311++G(d,p)(H,C,N,O,S)/def2-TZVP(V) level of theory, and crystallographic and optimized bond lengths and angles were compared. High correlation coefficients and low mean absolute errors between these two data sets proved that the selected level of theory was appropriate for the description of the system. The changes in structures and stability were examined by adding explicit solvent molecules. The Quantum Theory of Atoms in Molecules (QTAIM) was employed to analyze the intramolecular interactions with special emphasis on the effect of substituents. A good correlation between electron density/Laplacian and interatomic distance was found. Through molecular docking simulations towards Bovine Serum Albumin (BSA), the binding affinity of complexes was further investigated. The spontaneity of binding in the active position of BSA was shown. Further experimental studies on this class of compounds are advised.
钒配合物作为生物活性化合物已受到广泛关注。在本论文中,对三种先前报道的含有吡哆醛半卡巴腙、硫代半卡巴腙和S - 甲基异硫代半卡巴腙配体的双氧钒(V)配合物进行了理论研究。通过 Hirshfeld 表面分析研究了晶体结构中的分子间稳定相互作用。这些实验结构在 B3LYP - D3BJ/6 - 311++G(d,p)(H,C,N,O,S)/def2 - TZVP(V)理论水平上进行了优化,并比较了晶体学和优化后的键长与键角。这两个数据集之间的高相关系数和低平均绝对误差证明所选理论水平适用于该体系的描述。通过添加明确的溶剂分子来研究结构和稳定性的变化。采用分子中的原子量子理论(QTAIM)来分析分子内相互作用,特别强调取代基的影响。发现电子密度/拉普拉斯算子与原子间距离之间具有良好的相关性。通过对牛血清白蛋白(BSA)进行分子对接模拟,进一步研究了配合物的结合亲和力。结果表明在 BSA 的活性位点结合具有自发性。建议对这类化合物进行进一步的实验研究。