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基于微生物学和转录组分析评估以自养生物为营养源异养培养的细胞反应。

Evaluation of Cellular Responses of Heterotrophic Cultured with Autotrophic as a Nutrient Source by Analyses Based on Microbiology and Transcriptome.

作者信息

Nakanishi Akihito, Omino Natsumi, Nakamura Tomoyo, Goto Saki, Matsumoto Riri, Yomogita Misaki, Narisawa Naoki, Kimijima Manami, Iritani Kohei

机构信息

School of Bioscience and Biotechnology, Tokyo University of Technology, Hachioji 192-0982, Japan.

Graduate School of Bionics, Tokyo University of Technology, Hachioji 192-0982, Japan.

出版信息

Microorganisms. 2024 Feb 23;12(3):452. doi: 10.3390/microorganisms12030452.

Abstract

Heterotrophic microorganism LS5218 was cultured with flesh green alga C-9: NIES-2235 as a nutrient supplier. In order to evaluate the cell response of with , was evaluated with microbial methods and comprehensive gene transcriptional analyses. with showed a specific growth rate () of 1.04 ± 0.27, which was similar to that for cells growing in Luria-Bertani medium ( = 1.20 ± 0.40 h). Furthermore, comparing the cellular responses of in a green-algae-containing medium with those in the Luria-Bertani medium, transcriptomic analysis showed that upregulated gene transcription levels related to glycolysis, 5-phospho-d-ribosyl-1-diphosphate, and lipid synthesis; on the other hand, it decreased the levels related to lipid degradation. In particular, the transcription levels were increased by 103.7 times on ( * < 0.05 ( = 0.015)) in glycolysis, and decreased by 0.247 times on ( * < 0.05 ( = 0.041)) in lipolysis. These genes are unique and could regulate the direction of metabolism; these responses possibly indicate carbon source assimilation as a cellular response in . This paper is the first report to clarify that , a substance-producing strain, directly uses as a nutrient supplier by evaluation of the cellular responses analyzed with microbial methods and transcriptome analysis.

摘要

以肉色绿藻C-9:NIES-2235作为营养供应源培养异养微生物LS5218。为了评估其细胞反应,采用微生物方法和综合基因转录分析对其进行了评估。其比生长速率(μ)为1.04±0.27,与在Luria-Bertani培养基中生长的细胞(μ = 1.20±0.40 h⁻¹)相似。此外,通过转录组分析比较含绿藻培养基和Luria-Bertani培养基中其细胞反应,结果显示其上调了与糖酵解、5-磷酸-d-核糖-1-二磷酸和脂质合成相关的基因转录水平;另一方面,降低了与脂质降解相关的水平。特别是,糖酵解中相关转录水平在某物质上增加了103.7倍(P*<0.05(P = 0.015)),脂解中相关转录水平在某物质上降低了0.247倍(P*<0.05(P = 0.041))。这些基因是独特的,可调节代谢方向;这些反应可能表明其作为细胞反应的碳源同化作用。本文首次通过微生物方法和转录组分析评估细胞反应,阐明了产物质菌株直接利用绿藻作为营养供应源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/10972114/c29943f1538a/microorganisms-12-00452-g002.jpg

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