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[与大肠杆菌素DNA结合结构域融合的DNA聚合酶的特性分析]

[Characterization of a DNA polymerase fused with a DNA binding domain of colicin].

作者信息

Wang Yaping, Ping Xiaoyin, Zhao Yi, Liu Yang, Wu Lin, Ma Lixin

机构信息

State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, Hubei, China.

出版信息

Sheng Wu Gong Cheng Xue Bao. 2024 Mar 25;40(3):812-820. doi: 10.13345/j.cjb.230540.

Abstract

DNA polymerase, which was discovered from a thermophilic aquatic bacterium (), is an enzyme that possesses both reverse transcriptase activity and DNA polymerase activity. Colicin E (CE) protein belongs to a class of toxins that utilize the vitamin receptor BtuB as a transmembrane receptor. Among these toxins, CE2, CE7, CE8, and CE9 are classified as non-specific DNase-type colicins. DNA polymerase consists of a 5'→3' exonuclease domain, a 3'→5' exonuclease domain, and a polymerase domain. DNA polymerase lacking the 5'→3' exonuclease domain (Δ) exhibits higher yield but lower processivity, making it unable to amplify long fragments. In this study, we aimed to enhance the processivity of Δ. To this end, we fused dCE with Δ and observed a significant improvement in the processivity of the resulting dCE-Δ compared to DNA polymerase and dCE-. Furthermore, its reverse transcriptase activity was also higher than that of Δ. The most notable improvement was observed in dCE8-Δ, which not only successfully amplified 8 kb DNA fragments within 1 minute, but also yielded higher results compared to other mutants. In summary, this study successfully enhanced the PCR efficiency and reverse transcription activity of DNA polymerase by fusing Δ DNA polymerase with dCE. This approach provides a novel approach for modifying DNA polymerase and holds potential for the development of improved variants of DNA polymerase.

摘要

从嗜热水生细菌中发现的DNA聚合酶是一种兼具逆转录酶活性和DNA聚合酶活性的酶。大肠杆菌素E(CE)蛋白属于一类利用维生素受体BtuB作为跨膜受体的毒素。在这些毒素中,CE2、CE7、CE8和CE9被归类为非特异性DNase型大肠杆菌素。DNA聚合酶由一个5'→3'核酸外切酶结构域、一个3'→5'核酸外切酶结构域和一个聚合酶结构域组成。缺乏5'→3'核酸外切酶结构域(Δ)的DNA聚合酶产量较高但持续合成能力较低,使其无法扩增长片段。在本研究中,我们旨在提高Δ的持续合成能力。为此,我们将dCE与Δ融合,观察到所得的dCE-Δ与DNA聚合酶和dCE-相比,持续合成能力有显著提高。此外,其逆转录酶活性也高于Δ。在dCE8-Δ中观察到最显著的改善,它不仅在1分钟内成功扩增了8 kb的DNA片段,而且与其他突变体相比产量更高。总之,本研究通过将Δ DNA聚合酶与dCE融合,成功提高了DNA聚合酶的PCR效率和逆转录活性。这种方法为修饰DNA聚合酶提供了一种新方法,并具有开发改进型DNA聚合酶变体的潜力。

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