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硫酸盐还原菌的发现:陆地环境中多样的原核生物群体的生态功能。

Sulfate-reducing bacteria unearthed: ecological functions of the diverse prokaryotic group in terrestrial environments.

机构信息

Southern Federal University, Rostov-on-Don, Russia.

出版信息

Appl Environ Microbiol. 2024 Apr 17;90(4):e0139023. doi: 10.1128/aem.01390-23. Epub 2024 Mar 29.

Abstract

Sulfate-reducing prokaryotes (SRPs) are essential microorganisms that play crucial roles in various ecological processes. Even though SRPs have been studied for over a century, there are still gaps in our understanding of their biology. In the past two decades, a significant amount of data on SRP ecology has been accumulated. This review aims to consolidate that information, focusing on SRPs in soils, their relation to the rare biosphere, uncultured sulfate reducers, and their interactions with other organisms in terrestrial ecosystems. SRPs in soils form part of the rare biosphere and contribute to various processes as a low-density population. The data reveal a diverse range of sulfate-reducing taxa intricately involved in terrestrial carbon and sulfur cycles. While some taxa like and are well studied, others are more enigmatic. For example, members of the Acidobacteriota phylum appear to hold significant importance for the terrestrial sulfur cycle. Many aspects of SRP ecology remain mysterious, including sulfate reduction in different bacterial phyla, interactions with bacteria and fungi in soils, and the existence of soil sulfate-reducing archaea. Utilizing metagenomic, metatranscriptomic, and culture-dependent approaches will help uncover the diversity, functional potential, and adaptations of SRPs in the global environment.

摘要

硫酸盐还原菌(SRP)是在各种生态过程中发挥关键作用的必需微生物。尽管硫酸盐还原菌已经被研究了一个多世纪,但我们对其生物学的理解仍存在空白。在过去的二十年中,已经积累了大量关于 SRP 生态学的数据。本综述旨在整合这些信息,重点关注土壤中的 SRP、它们与稀有生物界的关系、未培养的硫酸盐还原菌以及它们在陆地生态系统中与其他生物的相互作用。土壤中的硫酸盐还原菌是稀有生物界的一部分,作为低密度种群参与各种过程。这些数据揭示了一系列复杂的参与陆地碳和硫循环的不同硫酸盐还原类群。虽然有些类群如 Desulfobacterota 和 Deltaproteobacteria 得到了很好的研究,但其他类群则更加神秘。例如,酸杆菌门的成员似乎对陆地硫循环具有重要意义。SRP 生态学的许多方面仍然神秘莫测,包括不同细菌门中的硫酸盐还原、土壤中细菌和真菌的相互作用以及土壤硫酸盐还原古菌的存在。利用宏基因组学、宏转录组学和基于培养的方法将有助于揭示全球环境中 SRP 的多样性、功能潜力和适应性。

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