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密度泛函理论计算可能证实砷与硫醇的粘附是砷中毒的主要机制。

Density Functional Theory Calculation May Confirm Arsenic-Thiol Adhesion as the Primary Mechanism of Arsenical Toxicity.

作者信息

Tsai Meng-Han, Lin Ying-Ting

机构信息

Department of Biotechnology, College of Life Science, Kaohsiung Medical University, Kaohsiung 80708, Taiwan.

Drug Development & Value Creation Research Center, Kaohsiung Medical University, Kaohsiung 807, Taiwan.

出版信息

ACS Omega. 2024 Mar 13;9(12):13975-13981. doi: 10.1021/acsomega.3c09269. eCollection 2024 Mar 26.

Abstract

Previously, it was believed that methylation was the body's primary method to detoxify inorganic arsenic. However, recent research has shown that the metabolized intermediate known as MMA is more toxic than arsenite and arsenate, contradicting a previous understanding. Another important question arises: is arsenical toxicity truly caused by arsenic binding to proteins through arsenic thiol adhesion? Based on the toxicity order of the experiment, with MMA being the most toxic, followed by arsenite, arsenate, DMA, and MMA, density functional theory (DFT) calculations can provide a straightforward assessment of this issue. Our practice captures all the transition states associated with a specific imaginary-frequency vibration mode, including proton transfer and simultaneous departure of leaving group. We have obtained the energy barriers for five arsenicals reacting with thiol, alcohol, and amine separately. In addition to energetic favorability, the following are the energy barriers for arsenic's reaction with thiol ranked from low to high: MMA (25.4 kcal/mol), arsenite (27.7 kcal/mol), arsenate (32.8 kcal/mol), DMA (36.2 kcal/mol), and MMA (38.3 kcal/mol). Results show that the toxicity of arsenicals is mainly caused by their reaction with thiol rather than with alcohol or amine, as supported by the trend of decreasing toxicity and increasing energy barriers. Thus, this DFT calculation may confirm the paradigm that arsenic-thiol adhesion is the primary cause of arsenic toxicity in the body.

摘要

以前,人们认为甲基化是人体对无机砷进行解毒的主要方式。然而,最近的研究表明,被称为MMA的代谢中间产物比亚砷酸盐和砷酸盐毒性更大,这与之前的认知相矛盾。另一个重要问题出现了:砷的毒性真的是由砷通过硫醇粘附与蛋白质结合所导致的吗?基于实验的毒性顺序,即MMA毒性最大,其次是亚砷酸盐、砷酸盐、二甲基砷酸(DMA)和MMA,密度泛函理论(DFT)计算可以对这个问题进行直接评估。我们的实践捕捉了与特定虚频振动模式相关的所有过渡态,包括质子转移和离去基团的同时离去。我们分别获得了五种砷化合物与硫醇、醇和胺反应的能垒。除了能量有利性之外,砷与硫醇反应的能垒从低到高依次为:MMA(25.4千卡/摩尔)、亚砷酸盐(27.7千卡/摩尔)、砷酸盐(32.8千卡/摩尔)、DMA(36.2千卡/摩尔)和MMA(38.3千卡/摩尔)。结果表明,砷化合物的毒性主要是由它们与硫醇的反应引起的,而不是与醇或胺的反应,毒性降低和能垒增加的趋势支持了这一点。因此,这种DFT计算可能证实了砷-硫醇粘附是体内砷毒性主要原因的范式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56fc/10976359/60a242b00755/ao3c09269_0001.jpg

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