Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.
Department of Computing Science, Simon Fraser University, Burnaby, BC, Canada.
Sci Rep. 2024 Apr 2;14(1):7736. doi: 10.1038/s41598-024-57334-1.
Evolution shapes protein sequences for their functions. Here, we studied the moonlighting functions of the N-linked sequon NXS/T, where X is not P, in human nucleocytosolic proteins. By comparing membrane and secreted proteins in which sequons are well known for N-glycosylation, we discovered that cyto-sequons can participate in nucleic acid binding, particularly in zinc finger proteins. Our global studies further discovered that sequon occurrence is largely proportional to protein length. The contribution of sequons to protein functions, including both N-glycosylation and nucleic acid binding, can be regulated through their density as well as the biased usage between NXS and NXT. In proteins where other PTMs or structural features are rich, such as phosphorylation, transmembrane ɑ-helices, and disulfide bridges, sequon occurrence is scarce. The information acquired here should help understand the relationship between protein sequence and function and assist future protein design and engineering.
进化使蛋白质序列适应其功能。在这里,我们研究了人核质蛋白中天冬酰胺-丝氨酸/苏氨酸(NXS/T)顺反子的兼职功能,其中 X 不是 P。通过比较膜蛋白和分泌蛋白中已知的 N 糖基化顺反子,我们发现胞质顺反子可以参与核酸结合,特别是锌指蛋白。我们的全局研究还发现,顺反子的出现与蛋白质长度大致成正比。顺反子对蛋白质功能的贡献,包括 N 糖基化和核酸结合,可以通过其密度以及 NXS 和 NXT 之间的偏向使用来调节。在富含其他 PTMs 或结构特征的蛋白质中,如磷酸化、跨膜α-螺旋和二硫键,顺反子的出现很少。这里获得的信息应该有助于理解蛋白质序列和功能之间的关系,并有助于未来的蛋白质设计和工程。