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人类RhD和RhAG血型蛋白的分子动力学

Molecular dynamics of the human RhD and RhAG blood group proteins.

作者信息

Floch Aline, Galochkina Tatiana, Pirenne France, Tournamille Christophe, de Brevern Alexandre G

机构信息

University Paris Est Créteil, INSERM U955 Equipe Transfusion et Maladies du Globule Rouge, IMRB, Créteil, France.

Laboratoire de Biologie Médicale de Référence en Immuno-Hématologie Moléculaire, Etablissement Français du Sang Ile-de-France, Créteil, France.

出版信息

Front Chem. 2024 Mar 19;12:1360392. doi: 10.3389/fchem.2024.1360392. eCollection 2024.

DOI:10.3389/fchem.2024.1360392
PMID:38566898
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10985258/
Abstract

Blood group antigens of the RH system (formerly known as "Rhesus") play an important role in transfusion medicine because of the severe haemolytic consequences of antibodies to these antigens. No crystal structure is available for RhD proteins with its partner RhAG, and the precise stoichiometry of the trimer complex remains unknown. To analyse their structural properties, the trimers formed by RhD and/or RhAG subunits were generated by protein modelling and molecular dynamics simulations were performed. No major differences in structural behaviour were found between trimers of different compositions. The conformation of the subunits is relatively constant during molecular dynamics simulations, except for three large disordered loops. This work makes it possible to propose a reasonable stoichiometry and demonstrates the potential of studying the structural behaviour of these proteins to investigate the hundreds of genetic variants relevant to transfusion medicine.

摘要

RH系统(以前称为“恒河猴”)的血型抗原在输血医学中起着重要作用,因为针对这些抗原的抗体具有严重的溶血后果。目前尚无RhD蛋白与其伴侣RhAG的晶体结构,三聚体复合物的确切化学计量仍不清楚。为了分析它们的结构特性,通过蛋白质建模生成了由RhD和/或RhAG亚基形成的三聚体,并进行了分子动力学模拟。不同组成的三聚体在结构行为上未发现重大差异。除了三个大的无序环外,亚基的构象在分子动力学模拟过程中相对恒定。这项工作使得提出合理的化学计量成为可能,并证明了研究这些蛋白质的结构行为以研究与输血医学相关的数百种基因变体的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/b754f83ee66e/fchem-12-1360392-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/7e89e2b7052e/fchem-12-1360392-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/e20b945ff0d9/fchem-12-1360392-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/ac4a285189ab/fchem-12-1360392-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/43011b0b590d/fchem-12-1360392-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/b2a5b4d356dc/fchem-12-1360392-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/b754f83ee66e/fchem-12-1360392-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/7e89e2b7052e/fchem-12-1360392-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/e20b945ff0d9/fchem-12-1360392-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/ac4a285189ab/fchem-12-1360392-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/43011b0b590d/fchem-12-1360392-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/b2a5b4d356dc/fchem-12-1360392-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6af/10985258/b754f83ee66e/fchem-12-1360392-g006.jpg

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