文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

转录因子对造血中核糖体 RNA 的调控。

Transcription factor regulation of ribosomal RNA in hematopoiesis.

机构信息

Division of Hematology and Oncology, Department of Medicine.

Department of Cell and Developmental Biology.

出版信息

Curr Opin Hematol. 2024 Jul 1;31(4):199-206. doi: 10.1097/MOH.0000000000000816. Epub 2024 Apr 11.


DOI:10.1097/MOH.0000000000000816
PMID:38568093
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11139577/
Abstract

PURPOSE OF REVIEW: Ribosomal RNAs (rRNAs) are transcribed within nucleoli from rDNA repeats by RNA Polymerase I (Pol I). There is variation in rRNA transcription rates across the hematopoietic tree, and leukemic blast cells have prominent nucleoli, indicating abundant ribosome biogenesis. The mechanisms underlying these variations are poorly understood. The purpose of this review is to summarize findings of rDNA binding and Pol I regulation by hematopoietic transcription factors. RECENT FINDINGS: Our group recently used custom genome assemblies optimized for human and mouse rDNA mapping to map nearly 2200 ChIP-Seq datasets for nearly 250 factors to rDNA, allowing us to identify conserved occupancy patterns for multiple transcription factors. We confirmed known rDNA occupancy of MYC and RUNX factors, and identified new binding sites for CEBP factors, IRF factors, and SPI1 at canonical motif sequences. We also showed that CEBPA degradation rapidly leads to reduced Pol I occupancy and nascent rRNA in mouse myeloid cells. SUMMARY: We propose that a number of hematopoietic transcription factors bind rDNA and potentially regulate rRNA transcription. Our model has implications for normal and malignant hematopoiesis. This review summarizes the literature, and outlines experimental considerations to bear in mind while dissecting transcription factor roles on rDNA.

摘要

综述目的:核糖体 RNA(rRNA)由 RNA 聚合酶 I(Pol I)在核仁内从 rDNA 重复序列转录。造血谱系中 rRNA 转录率存在差异,白血病母细胞有明显的核仁,表明核糖体生物发生丰富。这些变化的机制尚不清楚。本综述的目的是总结造血转录因子对 rDNA 结合和 Pol I 调节的研究结果。

最近的发现:我们的小组最近使用了针对人类和小鼠 rDNA 作图优化的定制基因组组装,对近 250 个因子的近 2200 个 ChIP-Seq 数据集进行了作图,使我们能够识别多个转录因子的保守结合模式。我们证实了 MYC 和 RUNX 因子已知的 rDNA 结合,并且在典型的 motif 序列中鉴定了 CEBP 因子、IRF 因子和 SPI1 的新结合位点。我们还表明,CEBPA 降解会迅速导致小鼠髓系细胞中 Pol I 结合减少和新生 rRNA 减少。

总结:我们提出,许多造血转录因子结合 rDNA,并可能调节 rRNA 转录。我们的模型对正常和恶性造血有影响。本综述总结了文献,并概述了在剖析转录因子在 rDNA 上的作用时需要注意的实验考虑因素。

相似文献

[1]
Transcription factor regulation of ribosomal RNA in hematopoiesis.

Curr Opin Hematol. 2024-7-1

[2]
High-resolution Sequencing Reveals that the Paf1 Complex May be a Conserved Transcription Elongation Factor for Eukaryotic RNA Polymerase I.

J Mol Biol. 2025-9-1

[3]
Control of ribosomal RNA synthesis by hematopoietic transcription factors.

Mol Cell. 2022-10-20

[4]
The ribosomal RNA transcription landscapes of Plasmodium falciparum and related apicomplexan parasites.

Nucleic Acids Res. 2025-7-8

[5]
EORTC guidelines for the use of erythropoietic proteins in anaemic patients with cancer: 2006 update.

Eur J Cancer. 2007-1

[6]
Nucleolar ribosomal RNA synthesis continues in differentiating lens fiber cells until abrupt nuclear degradation required for ocular lens transparency.

RNA Biol. 2025-12

[7]
Fork-barrier-independent roles of topoisomerase I in the ribosomal DNA.

Genetics. 2025-6-4

[8]
NBS1 facilitates preribosomal RNA biogenesis.

Proc Natl Acad Sci U S A. 2025-3-18

[9]
Measures implemented in the school setting to contain the COVID-19 pandemic.

Cochrane Database Syst Rev. 2022-1-17

[10]
Impact of residual disease as a prognostic factor for survival in women with advanced epithelial ovarian cancer after primary surgery.

Cochrane Database Syst Rev. 2022-9-26

引用本文的文献

[1]
Dynamics of Ribosomal RNA Transcription and Abundance in Normal and Leukemic Hematopoiesis.

bioRxiv. 2025-8-1

[2]
Active RNA synthesis patterns nuclear condensates.

bioRxiv. 2024-10-13

[3]
The role of lipoprotein‑associated phospholipase A2 in inflammatory response and macrophage infiltration in sepsis and the regulatory mechanisms.

Funct Integr Genomics. 2024-9-30

本文引用的文献

[1]
Database resources of the National Center for Biotechnology Information.

Nucleic Acids Res. 2024-1-5

[2]
FISH-Flow to quantify nascent and mature ribosomal RNA in mouse and human cells.

STAR Protoc. 2023-9-15

[3]
Synthesis of the ribosomal RNA precursor in human cells: mechanisms, factors and regulation.

Biol Chem. 2023-10-26

[4]
Construction and validation of customized genomes for human and mouse ribosomal DNA mapping.

J Biol Chem. 2023-6

[5]
Ribosome biogenesis factors-from names to functions.

EMBO J. 2023-4-3

[6]
Regulation of ribosomal RNA gene copy number, transcription and nucleolus organization in eukaryotes.

Nat Rev Mol Cell Biol. 2023-6

[7]
Control of ribosomal RNA synthesis by hematopoietic transcription factors.

Mol Cell. 2022-10-20

[8]
Structural insights into nuclear transcription by eukaryotic DNA-dependent RNA polymerases.

Nat Rev Mol Cell Biol. 2022-9

[9]
CEBPA mutations in 4708 patients with acute myeloid leukemia: differential impact of bZIP and TAD mutations on outcome.

Blood. 2022-1-6

[10]
MYC protein interactors in gene transcription and cancer.

Nat Rev Cancer. 2021-9

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索