Zachariou Margarita, Loizidou Eleni M, Spyrou George M
Bioinformatics Department, The Cyprus Institute of Neurology and Genetics.
biobank.cy, Center of Excellence in Biobanking and Biomedical Research, University of Cyprus.
bioRxiv. 2024 Mar 29:2024.03.29.586739. doi: 10.1101/2024.03.29.586739.
Immediate-early genes (IEGs) are a class of activity-regulated genes (ARGs) that are transiently and rapidly activated in the absence of de novo protein synthesis in response to neuronal activity. We explored the role of IEGs in genetic networks to pinpoint potential drug targets for Alzheimer's disease (AD). Using a combination of network analysis and genome-wide association study (GWAS) summary statistics we show that (1) IEGs exert greater topological influence across different human and mouse gene networks compared to other ARGs, (2) ARGs are sparsely involved in diseases and significantly more mutational constrained compared to non-ARGs, (3) Many AD-linked variants are in ARGs gene regions, mainly in near FOSB, with an AD risk eQTL that increases expression in cortical areas, (4) holds an influential place in a dense AD multi-omic network and a high AD druggability score. Our work on IEGs' influential network role is a valuable contribution to guiding interventions for diseases marked by dysregulation of their downstream targets and highlights as a promising underexplored AD-target.
即早基因(IEGs)是一类活性调节基因(ARGs),在无从头蛋白质合成的情况下,响应神经元活动而被短暂且快速激活。我们探讨了即早基因在基因网络中的作用,以确定阿尔茨海默病(AD)的潜在药物靶点。通过结合网络分析和全基因组关联研究(GWAS)汇总统计数据,我们发现:(1)与其他活性调节基因相比,即早基因在不同的人类和小鼠基因网络中发挥更大的拓扑学影响;(2)与非活性调节基因相比,活性调节基因较少参与疾病,且突变限制明显更多;(3)许多与AD相关的变异位于活性调节基因区域,主要在FOSB附近,存在一个增加皮质区域表达的AD风险eQTL;(4)在密集的AD多组学网络中占据有影响力的位置,且具有较高的AD药物可及性评分。我们关于即早基因在网络中具有影响力的研究工作,对于指导针对以其下游靶点失调为特征的疾病的干预措施具有重要贡献,并突出了其作为一个有前景但未被充分探索的AD靶点的地位。