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并作为慢性乙型肝炎中HBV诱导的肝纤维化的潜在诊断生物标志物。

and as potential diagnostic biomarkers for HBV-induced liver fibrosis in chronic hepatitis B.

作者信息

Song Jingru, Liu Lu, Wang Zheng, Xie Dong, Azami Nisma Lena Bahaji, Lu Lu, Huang Yanping, Ye Wei, Zhang Qin, Sun Mingyu

机构信息

Shuguang Hospital Affiliated to Shanghai University of Traditional Chinese Medicine, Shanghai, 201203, China.

Shanghai University of Traditional Chinese Medicine, Shanghai, 201203, China.

出版信息

Heliyon. 2024 Mar 25;10(7):e28329. doi: 10.1016/j.heliyon.2024.e28329. eCollection 2024 Apr 15.

DOI:10.1016/j.heliyon.2024.e28329
PMID:38596115
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11002547/
Abstract

BACKGROUND

The main cause of the liver fibrosis (LF) remains hepatitis B virus (HBV) infection, especially in China. Histologically, liver fibrosis still occurs progressively in chronic hepatitis B (CHB) patients, even if HBV-DNA is negative or undetectable. The diagnosis of LF is beneficial to control the development of it, also it may promote the reversal of LF. Although liver biopsy is the gold standard of diagnosis in LF at present, it isa traumatic diagnosis. There are no diagnostic biomarkers as yet for the condition. It is badly in need of biomarkers clinically, which is simple to test, minimally invasive, highly specific, and sensitive. Early detection of HBV-LF development is crucial in the prevention, treatment, and prognosis prediction of HBV-LF. Cytokines are closely associated with both immune regulation and inflammation in the progression of hepatitis B virus associated-liver fibrosis (HBV-LF). In this bioinformatic study, we not only analyzed the relationship between HBV-LF and immune infiltration, but also identified key genes to uncover new therapeutic targets.

OBJECTIVES

To find potential biomarkers for liver fibrosis in the development of chronic hepatic B patients.

MATERIALS AND METHODS

We obtained two sets of data including CHB/healthy control and CHB/HBV-LF from the Integrated Gene Expression (GEO) database to select for differential expression analysis. Protein-protein interaction (PPI) network was also generated, while key genes and important gene modules involved in the occurrence and development of HBV-LF were identified. These key genes were analyzed by functional enrichment analysis, module analysis, and survival analysis. Furthermore, the relationship between these two diseases and immune infiltration was explored.

RESULTS

Among the identified genes, 150 were individually associated with CHB and healthy control in the differential gene expression (DGE) analysis. While 14 with CHB and HBV-LF. It was also analyzed in the Robust rank aggregation (RRA) analysis, 34 differential genes were further identified by Cytohubba. Among 34 differential genes, two core genes were determined: and . was able to predict CHB positivity (area under the receiver operating characteristic curve [AUC-ROC] = 0.883, 95% confidence interval [CI] 0.786-0.963), while HBV-LF positivity ([AUC-ROC] = 0.687, 95% confidence interval [CI] 0.592-0.779). And as able to predict CHB positivity ([AUC-ROC] = 0.960, 95% confidence interval [CI] 0.915-0.992), while HBV-LF positivity ([AUC-ROC] = 0.773, 95% confidence interval [CI] 0.680-0.856). Relationship between gene expression and LF grades was  < 0.05, as well as .

CONCLUSION

and were found to be potential biomarkers and therapeutic targets for HBV-LF. It is instructive for research on the progression of LF in HBV patients, suppression of chronic inflammation, and development of molecularly targeted-therapy for HBV-LF.

摘要

背景

肝纤维化(LF)的主要病因仍是乙型肝炎病毒(HBV)感染,在中国尤其如此。从组织学上看,即使HBV-DNA呈阴性或检测不到,慢性乙型肝炎(CHB)患者的肝纤维化仍会逐渐发展。LF的诊断有助于控制其发展,也可能促进LF的逆转。尽管肝活检是目前LF诊断的金标准,但它是一种有创诊断。目前尚无针对该病症的诊断生物标志物。临床上迫切需要简单易测、微创、高特异性和高敏感性的生物标志物。早期检测HBV-LF的发展对于HBV-LF的预防、治疗和预后预测至关重要。细胞因子与乙型肝炎病毒相关性肝纤维化(HBV-LF)进展中的免疫调节和炎症均密切相关。在这项生物信息学研究中,我们不仅分析了HBV-LF与免疫浸润之间的关系,还鉴定了关键基因以发现新的治疗靶点。

目的

寻找慢性乙型肝炎患者发展过程中肝纤维化的潜在生物标志物。

材料与方法

我们从基因表达综合数据库(GEO)中获取了两组数据,包括CHB/健康对照和CHB/HBV-LF,用于选择差异表达分析。还构建了蛋白质-蛋白质相互作用(PPI)网络,同时鉴定了参与HBV-LF发生发展的关键基因和重要基因模块。通过功能富集分析、模块分析和生存分析对这些关键基因进行分析。此外,还探讨了这两种疾病与免疫浸润之间的关系。

结果

在鉴定出的基因中,差异基因表达(DGE)分析中有150个基因分别与CHB和健康对照相关。而有14个基因与CHB和HBV-LF相关。在稳健秩聚合(RRA)分析中也进行了分析,通过Cytohubba进一步鉴定出34个差异基因。在34个差异基因中,确定了两个核心基因: 和 。 能够预测CHB阳性(受试者工作特征曲线下面积[AUC-ROC]=0.883,95%置信区间[CI]0.786-0.963),而预测HBV-LF阳性([AUC-ROC]=0.687,95%置信区间[CI]0.592-0.779)。 能够预测CHB阳性([AUC-ROC]=0.960,95%置信区间[CI]0.915-0.992),而预测HBV-LF阳性([AUC-ROC]=0.773,95%置信区间[CI]0.680-0.856)。 基因表达与LF分级之间的关系为 <0.05, 也是如此。

结论

发现 和 是HBV-LF的潜在生物标志物和治疗靶点。这对研究HBV患者肝纤维化的进展、抑制慢性炎症以及开发HBV-LF的分子靶向治疗具有指导意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/bcdd3f255827/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/a526c16babf3/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/4b993f783e62/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/17876bf8aa09/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/109c8f9ec1c0/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/449439fa78f3/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/64833cac7a93/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/bcdd3f255827/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/a526c16babf3/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/4b993f783e62/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/17876bf8aa09/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/109c8f9ec1c0/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/449439fa78f3/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/64833cac7a93/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2654/11002547/bcdd3f255827/gr7.jpg

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