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印度金裳凤蝶基因组测序与组装(Saturniidae,鳞翅目)。

Genome sequencing and assembly of Indian golden silkmoth, Antheraea assamensis Helfer (Saturniidae, Lepidoptera).

机构信息

Seribiotech Research Laboratory, Central Silk Board, Kodathi, Bangalore, India.

Central Muga Eri Research and Training Institute, Central Silk Board, Jorhat, India.

出版信息

Genomics. 2024 May;116(3):110841. doi: 10.1016/j.ygeno.2024.110841. Epub 2024 Apr 9.

Abstract

Muga silkworm (Antheraea assamensis), one of the economically important wild silkmoths, is unique among saturniid silkmoths. It is confined to the North-eastern part of India. Muga silk has the highest value among the other silks. Unlike other silkmoths, A. assamensis has a low chromosome number (n = 15), and ZZ/ZO sex chromosome system. Here, we report the first high-quality draft genome of A. assamensis, assembled by employing the Illumina and PacBio sequencing platforms. The assembled genome of A. assamensis is 501.18 Mb long, with 2697 scaffolds and an N50 of 683.23 Kb. The genome encompasses 18,385 protein-coding genes, 86.29% of which were functionally annotated. Phylogenetic analysis of A. assamensis revealed its divergence from other Antheraea species approximately 28.7 million years ago. Moreover, an investigation into detoxification-related gene families, CYP450, GST, and ABC-transporter, revealed a significant expansion in A. assamensis as compared to the Bombyx mori. This expansion is comparable to Spodoptera litura, suggesting adaptive responses linked to the polyphagous behavior observed in these insects. This study provides valuable insights into the molecular basis of evolutionary divergence and adaptations in muga silkmoth. The genome assembly reported in this study will significantly help in the functional genomics studies on A. assamensis and other Antheraea species along with comparative genomics analyses of Bombycoidea insects.

摘要

木薯蚕(Antheraea assamensis)是一种经济上重要的野生蚕蛾,在 Saturniidae 蚕蛾中独具特色。它仅分布于印度东北部。木薯蚕丝的价值在其他蚕丝中最高。与其他蚕蛾不同,A. assamensis 的染色体数目(n = 15)较低,且具有 ZZ/ZO 性染色体系统。在这里,我们报道了 A. assamensis 的第一个高质量基因组草图,该草图是通过使用 Illumina 和 PacBio 测序平台组装而成的。A. assamensis 的组装基因组长 501.18 Mb,由 2697 个支架组成,N50 为 683.23 Kb。该基因组包含 18385 个蛋白质编码基因,其中 86.29%具有功能注释。对 A. assamensis 的系统发育分析表明,它大约在 2870 万年前与其他 Antheraea 物种分化。此外,对解毒相关基因家族(CYP450、GST 和 ABC 转运蛋白)的研究表明,与 Bombyx mori 相比,A. assamensis 中存在显著扩张。这种扩张与 Spodoptera litura 相当,表明与这些昆虫中观察到的多食性行为相关的适应性反应。这项研究为木薯蚕的进化分化和适应提供了有价值的见解。本研究中报道的基因组组装将极大地帮助 A. assamensis 和其他 Antheraea 物种的功能基因组学研究,以及对 Bombycoidea 昆虫的比较基因组学分析。

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