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细胞分裂周期相关家族基因的整合分析揭示了胶质瘤发生的潜在机制,并构建了一个人工智能驱动的预后特征。

Integration analysis of cell division cycle-associated family genes revealed potential mechanisms of gliomagenesis and constructed an artificial intelligence-driven prognostic signature.

机构信息

Department of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan 430060, Hubei Province, China.

Department of Orthopedics, The First Affiliated Hospital of Nanchang Medical College, Nanchang 330006, Jiangxi Province, China.

出版信息

Cell Signal. 2024 Jul;119:111168. doi: 10.1016/j.cellsig.2024.111168. Epub 2024 Apr 9.

Abstract

Cell division cycle-associated (CDCA) gene family members are essential cell proliferation regulators and play critical roles in various cancers. However, the function of the CDCA family genes in gliomas remains unclear. This study aims to elucidate the role of CDCA family members in gliomas using in vitro and in vivo experiments and bioinformatic analyses. We included eight glioma cohorts in this study. An unsupervised clustering algorithm was used to identify novel CDCA gene family clusters. Then, we utilized multi-omics data to elucidate the prognostic disparities, biological functionalities, genomic alterations, and immune microenvironment among glioma patients. Subsequently, the scRNA-seq analysis and spatial transcriptomic sequencing analysis were carried out to explore the expression distribution of CDCA2 in glioma samples. In vivo and in vitro experiments were used to investigate the effects of CDCA2 on the viability, migration, and invasion of glioma cells. Finally, based on ten machine-learning algorithms, we constructed an artificial intelligence-driven CDCA gene family signature called the machine learning-based CDCA gene family score (MLCS). Our results suggested that patients with the higher expression levels of CDCA family genes had a worse prognosis, more activated RAS signaling pathways, and more activated immunosuppressive microenvironments. CDCA2 knockdown inhibited the proliferation, migration, and invasion of glioma cells. In addition, the MLCS had robust and favorable prognostic predictive ability and could predict the response to immunotherapy and chemotherapy drug sensitivity.

摘要

细胞分裂周期相关(CDCA)基因家族成员是细胞增殖的重要调节因子,在各种癌症中发挥着关键作用。然而,CDCA 家族基因在神经胶质瘤中的功能尚不清楚。本研究旨在通过体外和体内实验以及生物信息学分析阐明 CDCA 家族成员在神经胶质瘤中的作用。本研究纳入了 8 个神经胶质瘤队列。使用无监督聚类算法鉴定新的 CDCA 基因家族簇。然后,我们利用多组学数据阐明了神经胶质瘤患者之间的预后差异、生物学功能、基因组改变和免疫微环境。随后,进行了 scRNA-seq 分析和空间转录组测序分析,以探讨 CDCA2 在神经胶质瘤样本中的表达分布。进行了体内和体外实验,以研究 CDCA2 对神经胶质瘤细胞活力、迁移和侵袭的影响。最后,基于十种机器学习算法,我们构建了一个人工智能驱动的 CDCA 基因家族特征,称为基于机器学习的 CDCA 基因家族评分(MLCS)。我们的结果表明,CDCA 家族基因表达水平较高的患者预后较差,RAS 信号通路更活跃,免疫抑制微环境更活跃。CDCA2 敲低抑制了神经胶质瘤细胞的增殖、迁移和侵袭。此外,MLCS 具有强大且有利的预后预测能力,可预测对免疫治疗和化疗药物敏感性的反应。

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