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鲨鱼基因组大小的进化及其与细胞、生活史、生态和多样性特征的关系。

Shark genome size evolution and its relationship with cellular, life-history, ecological, and diversity traits.

机构信息

Ichthyology Section, Bavarian State Collection of Zoology (SNSB-ZSM), 81247, Munich, Germany.

Systematic Zoology, Department Biology II, Faculty of Biology, Ludwig Maximilian University of Munich (LMU), 82152, Munich, Germany.

出版信息

Sci Rep. 2024 Apr 17;14(1):8909. doi: 10.1038/s41598-024-59202-4.

DOI:10.1038/s41598-024-59202-4
PMID:38632352
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11024215/
Abstract

Among vertebrates, sharks exhibit both large and heterogeneous genome sizes ranging from 2.86 to 17.05 pg. Aiming for a better understanding of the patterns and causalities of shark genome size evolution, we applied phylogenetic comparative methods to published genome-size estimates for 71 species representing the main phylogenetic lineages, life-histories and ecological traits. The sixfold range of genome size variation was strongly traceable throughout the phylogeny, with a major expansion preceding shark diversification during the late Paleozoic and an ancestral state (6.33 pg) close to the present-day average (6.72 pg). Subsequent deviations from this average occurred at higher rates in squalomorph than in galeomorph sharks and were unconnected to evolutionary changes in the karyotype architecture, which were dominated by descending disploidy events. Genome size was positively correlated with cell and nucleus sizes and negatively with metabolic rate. The metabolic constraints on increasing genome size also manifested at higher phenotypic scales, with large genomes associated with slow lifestyles and purely marine waters. Moreover, large genome sizes were also linked to non-placental reproductive modes, which may entail metabolically less demanding embryological developments. Contrary to ray-finned fishes, large genome size was associated neither with the taxonomic diversity of affected clades nor with low genetic diversity.

摘要

在脊椎动物中,鲨鱼的基因组大小范围很大,从 2.86 到 17.05 pg 不等。为了更好地理解鲨鱼基因组大小进化的模式和原因,我们应用系统发育比较方法,对代表主要系统发育谱系、生活史和生态特征的 71 个物种的已发表的基因组大小估计值进行了分析。六倍的基因组大小变化范围在整个系统发育中都有很强的可追踪性,在晚古生代鲨鱼多样化之前,基因组发生了一次主要扩张,而祖先状态(6.33 pg)接近当今的平均值(6.72 pg)。随后,与这种平均值的偏差在角鲨目鲨鱼中比在鳐形目鲨鱼中更高,并且与核型结构的进化变化无关,核型结构主要由下降的非整倍体事件主导。基因组大小与细胞和细胞核大小呈正相关,与代谢率呈负相关。增加基因组大小的代谢限制也在更高的表型尺度上表现出来,大基因组与缓慢的生活方式和纯粹的海洋水域有关。此外,大的基因组大小也与非胎盘生殖模式有关,这可能需要代谢要求较低的胚胎发育。与硬骨鱼类不同,大的基因组大小既与受影响的进化枝的分类多样性无关,也与低遗传多样性无关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/554c/11024215/4b466fb3b37e/41598_2024_59202_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/554c/11024215/4b466fb3b37e/41598_2024_59202_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/554c/11024215/4b466fb3b37e/41598_2024_59202_Fig2_HTML.jpg

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Tail shape and the swimming speed of sharks.鲨鱼的尾巴形状与游泳速度
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