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关于 CC 键形成 α-氧代胺合酶的结构和机制研究,允许 L-谷氨酸作为底物。

Structural and mechanistic investigations on CC bond forming α-oxoamine synthase allowing L-glutamate as substrate.

机构信息

Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Centre for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai 200240, P. R. China.

State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P. R. China.

出版信息

Int J Biol Macromol. 2024 May;268(Pt 1):131696. doi: 10.1016/j.ijbiomac.2024.131696. Epub 2024 Apr 18.

DOI:10.1016/j.ijbiomac.2024.131696
PMID:38642679
Abstract

Carbon‑carbon (C-C) bonds serve as the fundamental structural backbone of organic molecules. As a critical CC bond forming enzyme, α-oxoamine synthase is responsible for the synthesis of α-amino ketones by performing the condensation reaction between amino acids and acyl-CoAs. We previously identified an α-oxoamine synthase (AOS), named as Alb29, involved in albogrisin biosynthesis in Streptomyces albogriseolus MGR072. This enzyme belongs to the α-oxoamine synthase family, a subfamily under the pyridoxal 5'-phosphate (PLP) dependent enzyme superfamily. In this study, we report the crystal structures of Alb29 bound to PLP and L-Glu, which provide the atomic-level structural insights into the substrate recognition by Alb29. We discover that Alb29 can catalyze the amino transformation from L-Gln to L-Glu, besides the condensation of L-Glu with β-methylcrotonyl coenzyme A. Subsequent structural analysis has revealed that one flexible loop in Alb29 plays an important role in both amino transformation and condensation. Based on the crystal structure of the S87G mutant in the loop region, we capture two distinct conformations of the flexible loop in the active site, compared with the wild-type Alb29. Our study offers valuable insights into the catalytic mechanism underlying substrate recognition of Alb29.

摘要

碳-碳(C-C)键是有机分子的基本结构骨架。α-氧代胺合酶作为一种关键的 CC 键形成酶,通过在氨基酸和酰基辅酶 A 之间进行缩合反应,负责合成α-氨基酮。我们之前在灰色链霉菌 MGR072 中鉴定了一种参与 albogrisin 生物合成的α-氧代胺合酶(AOS),命名为 Alb29。该酶属于α-氧代胺合酶家族,是吡哆醛 5'-磷酸(PLP)依赖酶超家族的一个亚家族。在这项研究中,我们报告了 Alb29 与 PLP 和 L-Glu 结合的晶体结构,这为 Alb29 对底物的识别提供了原子水平的结构见解。我们发现 Alb29 除了可以催化 L-Glu 与β-甲基巴豆酰辅酶 A 的缩合反应外,还可以催化 L-Gln 的氨基转化为 L-Glu。随后的结构分析表明,Alb29 中的一个柔性环在氨基转化和缩合中都发挥着重要作用。基于该环区域 S87G 突变体的晶体结构,我们在活性位点中捕捉到了柔性环的两种不同构象,与野生型 Alb29 相比。我们的研究为 Alb29 底物识别的催化机制提供了有价值的见解。

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