Department of Marine Biology and Sciences, School of Biological Sciences, Tokai University, Minami-Ku, Sapporo, 005-8601, Japan.
Department of Genetics, The Graduate University for Advanced Studies, SOKENDAI, Shizuoka, Mishima, 411-8540, Japan.
Arch Microbiol. 2024 Apr 21;206(5):228. doi: 10.1007/s00203-024-03937-1.
A novel Lysinibacillus strain, designated KH24, was isolated from the gut of Siganus fuscescens, a herbivorous fish, which was captured off the coast of Okinawa, Japan. Strain KH24 is a rod-shaped, Gram-stain-positive, spore-forming, and motile bacterium that forms off-white colonies. The 16S rRNA gene sequence of strain KH24 showed the highest similarity (97.4%) with Lysinibacillus pakistanensis JCM 18776 and L. irui IRB4-01. Genomic similarities between strain KH24 and Lysinibacillus type strains, based on average nucleotide identity, digital DNA-DNA hybridization (genome-to-genome distance calculation), and average amino acid identity were 70.4-77.7%, 17.1-24.4%, and 69.2-81.2%, respectively, which were lower than species delineation thresholds. Strain KH24 growth occurred at pH values of 5.5-8.5, temperatures of 20-40 °C, and NaCl concentrations of 0-4.0%, and optimally at pH 7.0, 30 °C, and 0%, respectively. Unlike related Lysinibacillus type strains, strain KH24 could assimilate D-glucose, D-fructose, N-acetyl-glucosamine, amygdalin, arbutin, esculin, ferric citrate, salicin, D-cellobiose, D-maltose, D-sucrose, and gentiobiose. Major fatty acids included iso-C (45.8%), anteiso-C (15.1%), iso-C (12.6%), and anteiso-C (10.9%). Menaquinone-7 was the predominant quinone, and the major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, and lysophosphatidylethanolamine. Based on its genetic and phenotypic properties, strain KH24 represents a novel species of the genus Lysinibacillus, for which the name Lysinibacillus piscis sp. nov. is proposed. The type strain is KH24 (= JCM 36611 = KCTC 43676).
一株新型的芽孢杆菌菌株,被命名为 KH24,是从冲绳海岸捕获的草食性鱼类黄鳍鲷的肠道中分离出来的。菌株 KH24 呈杆状,革兰氏阳性,芽孢形成,能运动,形成灰白色菌落。菌株 KH24 的 16S rRNA 基因序列与巴基斯坦芽孢杆菌 JCM 18776 和 L. irui IRB4-01 的相似度最高(97.4%)。基于平均核苷酸同源性、数字 DNA-DNA 杂交(基因组到基因组距离计算)和平均氨基酸同源性,菌株 KH24 与芽孢杆菌模式菌株的基因组相似性分别为 70.4-77.7%、17.1-24.4%和 69.2-81.2%,均低于种的划分阈值。菌株 KH24 的生长条件为 pH 值 5.5-8.5、温度 20-40°C 和 NaCl 浓度 0-4.0%,最适条件分别为 pH 值 7.0、30°C 和 0%。与相关的芽孢杆菌模式菌株不同,菌株 KH24 能够同化 D-葡萄糖、D-果糖、N-乙酰葡萄糖胺、苦杏仁苷、熊果苷、七叶苷、柠檬酸铁、水杨苷、D-纤维二糖、D-麦芽糖、D-蔗糖和龙胆二糖。主要脂肪酸包括 iso-C(45.8%)、anteiso-C(15.1%)、iso-C(12.6%)和 anteiso-C(10.9%)。menaquinone-7 是主要的醌,主要的极性脂是双磷脂酰甘油、磷脂酰甘油和溶血磷脂酰乙醇胺。基于其遗传和表型特性,菌株 KH24 代表了芽孢杆菌属的一个新种,建议将其命名为 Lysinibacillus piscis sp. nov.。模式菌株为 KH24(=JCM 36611=KCTC 43676)。