利用孟德尔随机化和转录组分析探讨 BMI>30 的急性胰腺炎患者的潜在生物标志物。

Investigating potential biomarkers of acute pancreatitis in patients with a BMI>30 using Mendelian randomization and transcriptomic analysis.

机构信息

Department of Hepatobilialy Surgery, General Surgery Center, General Hospital of Western Theater Command, Chengdu, 610083, China.

Department of General Surgery, Affiliated Hospital of Southwest Medical University, Luzhou, 646000, China.

出版信息

Lipids Health Dis. 2024 Apr 22;23(1):119. doi: 10.1186/s12944-024-02102-3.

Abstract

BACKGROUND

Acute pancreatitis (AP) has become a significant global health concern, and a high body mass index (BMI) has been identified as a key risk factor exacerbating this condition. Within this context, lipid metabolism assumes a critical role. The complex relationship between elevated BMI and AP, mediated by lipid metabolism, markedly increases the risk of complications and mortality. This study aimed to accurately define the correlation between BMI and AP, incorporating a comprehensive analysis of the interactions between individuals with high BMI and AP.

METHODS

Mendelian randomization (MR) analysis was first applied to determine the causal relationship between BMI and the risk of AP. Subsequently, three microarray datasets were obtained from the GEO database. This was followed by an analysis of differentially expressed genes and the application of weighted gene coexpression network analysis (WGCNA) to identify key modular genes associated with AP and elevated BMI. Functional enrichment analysis was then performed to shed light on disease pathogenesis. To identify the most informative genes, machine learning algorithms, including Random Forest (RF), Support Vector Machine-Recursive Feature Elimination (SVM-RFE), and Least Absolute Shrinkage and Selection Operator (LASSO), were employed. Subsequent analysis focused on the colocalization of the Quantitative Trait Loci (eQTL) data associated with the selected genes and Genome-Wide Association Studies (GWAS) data related to the disease. Preliminary verification of gene expression trends was conducted using external GEO datasets. Ultimately, the diagnostic potential of these genes was further confirmed through the development of an AP model in mice with a high BMI.

RESULTS

A total of 21 intersecting genes related to BMI>30, AP, and lipid metabolism were identified from the datasets. These genes were primarily enriched in pathways related to cytosolic DNA sensing, cytokine‒cytokine receptor interactions, and various immune and inflammatory responses. Next, three machine learning techniques were utilized to identify HADH as the most prevalent diagnostic gene. Colocalization analysis revealed that HADH significantly influenced the risk factors associated with BMI and AP. Furthermore, the trend in HADH expression within the external validation dataset aligned with the trend in the experimental data, thus providing a preliminary validation of the experimental findings.The changes in its expression were further validated using external datasets and quantitative real-time polymerase chain reaction (qPCR).

CONCLUSION

This study systematically identified HADH as a potential lipid metabolism-grounded biomarker for AP in patients with a BMI>30.

摘要

背景

急性胰腺炎(AP)已成为一个重大的全球健康问题,高体重指数(BMI)已被确定为加重这种疾病的关键风险因素。在这种情况下,脂质代谢起着关键作用。BMI 升高与 AP 之间的复杂关系,通过脂质代谢介导,显著增加了并发症和死亡率的风险。本研究旨在准确定义 BMI 与 AP 之间的相关性,综合分析 BMI 升高与 AP 患者之间的相互作用。

方法

首先应用孟德尔随机化(MR)分析确定 BMI 与 AP 风险之间的因果关系。随后,从 GEO 数据库中获得三个微阵列数据集。接下来,分析差异表达基因,并应用加权基因共表达网络分析(WGCNA)识别与 AP 和 BMI 升高相关的关键模块基因。然后进行功能富集分析,以阐明疾病发病机制。为了识别最具信息量的基因,使用了机器学习算法,包括随机森林(RF)、支持向量机-递归特征消除(SVM-RFE)和最小绝对收缩和选择算子(LASSO)。随后的分析集中于与所选基因相关的数量性状基因座(eQTL)数据和与疾病相关的全基因组关联研究(GWAS)数据的共定位。使用外部 GEO 数据集对基因表达趋势进行初步验证。最终,通过在 BMI 升高的小鼠中建立 AP 模型,进一步证实了这些基因的诊断潜力。

结果

从数据集中总共确定了 21 个与 BMI>30、AP 和脂质代谢相关的交集基因。这些基因主要富集在与细胞质 DNA 感应、细胞因子-细胞因子受体相互作用以及各种免疫和炎症反应相关的途径中。接下来,使用三种机器学习技术识别出 HADH 作为最常见的诊断基因。共定位分析表明,HADH 显著影响与 BMI 和 AP 相关的风险因素。此外,外部验证数据集内 HADH 表达趋势与实验数据趋势一致,从而初步验证了实验结果。使用外部数据集和定量实时聚合酶链反应(qPCR)进一步验证了其表达的变化。

结论

本研究系统地确定 HADH 作为 BMI>30 的 AP 患者潜在的基于脂质代谢的生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a89/11034057/06eb138136b6/12944_2024_2102_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索