通过单细胞 RNA 测序解析肿瘤周细胞预测结直肠癌预后和免疫治疗反应。

Predicting prognosis and immunotherapy response in colorectal cancer by pericytes insights from single-cell RNA sequencing.

机构信息

College of Life Sciences, University of Chinese Academy of Sciences, Yuquan Road, Shijingshan District, Beijing 100049, China.

BGI Research, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.

出版信息

Hum Mol Genet. 2024 Jul 6;33(14):1215-1228. doi: 10.1093/hmg/ddae064.

Abstract

Immunotherapy has revolutionized the treatment of tumors, but there are still a large number of patients who do not benefit from immunotherapy. Pericytes play an important role in remodeling the immune microenvironment. However, how pericytes affect the prognosis and treatment resistance of tumors is still unknown. This study jointly analyzed single-cell RNA sequencing (scRNA-seq) data and bulk RNA sequencing data of multiple cancers to reveal pericyte function in the colorectal cancer microenvironment. Analyzing over 800 000 cells, it was found that colorectal cancer had more pericyte enrichment in tumor tissues than other cancers. We then combined the TCGA database with multiple public datasets and enrolled more than 1000 samples, finding that pericyte may be closely related to poor prognosis due to the higher epithelial-mesenchymal transition (EMT) and hypoxic characteristics. At the same time, patients with more pericytes have higher immune checkpoint molecule expressions and lower immune cell infiltration. Finally, the contributions of pericyte in poor treatment response have been demonstrated in multiple immunotherapy datasets (n = 453). All of these observations suggest that pericyte can be used as a potential biomarker to predict patient disease progression and immunotherapy response.

摘要

免疫疗法已经彻底改变了肿瘤的治疗方法,但仍有大量患者无法从免疫疗法中获益。周细胞在重塑免疫微环境中发挥着重要作用。然而,周细胞如何影响肿瘤的预后和治疗耐药性尚不清楚。本研究联合分析了多种癌症的单细胞 RNA 测序(scRNA-seq)数据和批量 RNA 测序数据,以揭示周细胞在结直肠癌微环境中的功能。通过分析超过 800,000 个细胞,发现结直肠癌组织中的周细胞富集程度高于其他癌症。然后,我们将 TCGA 数据库与多个公共数据集相结合,纳入了超过 1000 个样本,发现由于上皮-间充质转化(EMT)和缺氧特征较高,周细胞可能与不良预后密切相关。同时,周细胞较多的患者具有更高的免疫检查点分子表达和更低的免疫细胞浸润。最后,在多个免疫治疗数据集(n=453)中证明了周细胞在治疗反应不良中的贡献。所有这些观察结果表明,周细胞可以作为一种潜在的生物标志物,用于预测患者疾病进展和免疫治疗反应。

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