Song Chaodong, Liu Rui, Yin Doudou, Xie Chenjie, Liang Ying, Yang Dengfeng, Jiang Mingguo, Zhang Hongyan, Shen Naikun
Guangxi Key Laboratory of Polysaccharide Materials and Modification, School of Marine Sciences and Biotechnology, Guangxi Minzu University, Nanning 530000, China.
Guangxi Key Laboratory of Marine Natural Products and Combinatorial Biosynthesis Chemistry, Guangxi Beibu Gulf Marine Research Center, Guangxi Academy of Sciences, No. 98, Daxue Road, Nanning 530007, China.
Microorganisms. 2024 Apr 22;12(4):841. doi: 10.3390/microorganisms12040841.
Microbial degradation of feathers offers potential for bioremediation, yet the microbial response mechanisms warrant additional investigation. In prior work, Gxun-7, which demonstrated robust degradation of feathers at elevated concentrations, was isolated. However, the molecular mechanism of this degradation remains only partially understood. To investigate this, we used RNA sequencing (RNA-seq) to examine the genes that were expressed differentially in Gxun-7 when exposed to 25 g/L of feather substrate. The RNA-seq analysis identified 5571 differentially expressed genes; of these, 795 were upregulated and 603 were downregulated. Upregulated genes primarily participated in proteolysis, amino acid, and pyruvate metabolism. Genes encoding proteases, as well as those involved in sulfur metabolism, phenazine synthesis, and type VI secretion systems, were notably elevated, highlighting their crucial function in feather decomposition. Integration of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) taxonomies, combined with a review of the literature, led us to propose that metabolic feather degradation involves environmental activation, reducing agent secretion, protease release, peptide/amino acid uptake, and metabolic processes. Sulfite has emerged as a critical activator of keratinase catalysis, while cysteine serves as a regulatory mediator. qRT-PCR assay results for 11 selected gene subset corroborated the RNA-seq findings. This study enhances our understanding of the transcriptomic responses of Gxun-7 to feather degradation and offers insights into potential degradation mechanisms, thereby aiding in the formulation of effective feather waste management strategies in poultry farming.
羽毛的微生物降解为生物修复提供了潜力,但微生物的反应机制仍需进一步研究。在之前的工作中,分离出了Gxun-7,它在高浓度下对羽毛具有强大的降解能力。然而,这种降解的分子机制仍只得到部分理解。为了研究这一点,我们使用RNA测序(RNA-seq)来检测Gxun-7在暴露于25 g/L羽毛底物时差异表达的基因。RNA-seq分析鉴定出5571个差异表达基因;其中,795个基因上调,603个基因下调。上调的基因主要参与蛋白水解、氨基酸和丙酮酸代谢。编码蛋白酶的基因以及参与硫代谢、吩嗪合成和VI型分泌系统的基因显著升高,突出了它们在羽毛分解中的关键作用。通过整合基因本体论(GO)和京都基因与基因组百科全书(KEGG)分类法,并结合文献综述,我们提出代谢性羽毛降解涉及环境激活、还原剂分泌、蛋白酶释放、肽/氨基酸摄取和代谢过程。亚硫酸盐已成为角蛋白酶催化的关键激活剂,而半胱氨酸作为调节介质。对11个选定基因子集的qRT-PCR检测结果证实了RNA-seq的发现。本研究增进了我们对Gxun-7对羽毛降解的转录组反应的理解,并为潜在的降解机制提供了见解,从而有助于制定家禽养殖中有效的羽毛废物管理策略。