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从嗜热污泥中分离出的嗜热耐氯霉素细菌PLACP1的基因组序列草图及形态学数据

Draft genome sequence and morphological data of PLACP1, a thermophilic chloramphenicol-resistant bacterium isolated from thermophilic sludge.

作者信息

Tseng Hou-Chia, Matsutani Minenosuke, Fujimoto Naoshi, Ohnishi Akihiro

机构信息

Department of Fermentation Science, Faculty of Applied Bioscience, Tokyo University of Agriculture, 1-1 Sakuragaoka 1-chome, Setagaya-ku, Tokyo 156-8502, Japan.

NODAI Genome Research Center, Tokyo University of Agriculture, Tokyo 156-8502, Japan.

出版信息

Data Brief. 2024 Apr 18;54:110447. doi: 10.1016/j.dib.2024.110447. eCollection 2024 Jun.

Abstract

is a thermophilic aerobic Actinomyces often found in compost that is suggested to play a primary role in the degradation of organic matter and is a potential antibiotic-resistance gene (ARG)-hosting bacterium during the composting process. PLACP1 was isolated from thermophilic sludge on a Columbia plate supplemented with chloramphenicol. PLACP1 was Gram-stain-positive with cells longer than 20 μm that branched and intertwined with each other. A draft genome sequence of PLACP1 was generated using the Illumina NovaSeq system and deposited in the National Center for Biotechnology Information database under the BioProject accession numbers PRJDB17484 and SAMD00736731. The genome sequence comprised 3,395,140 bp, with 57.97 % GC content and 3,368 genes, including 3,267 protein-coding, 6 rRNA, and 56 tRNA genes. Based on the Comprehensive Antibiotic Resistance Database, 237 predicted gene products were related to ARGs, including 44 macrolide antibiotic-related genes (19 %) as the largest group. This dataset will be beneficial for the morphological identification, comparative genomic analyses, and ARG research in the genus .

摘要

是一种嗜热需氧放线菌,常见于堆肥中,被认为在有机物降解中起主要作用,并且在堆肥过程中是一种潜在的携带抗生素抗性基因(ARG)的细菌。PLACP1是从添加氯霉素的哥伦比亚平板上的嗜热污泥中分离出来的。PLACP1革兰氏染色呈阳性,细胞长度超过20μm,相互分支并交织在一起。使用Illumina NovaSeq系统生成了PLACP1的基因组草图序列,并以生物项目登录号PRJDB17484和SAMD00736731保存在国家生物技术信息中心数据库中。基因组序列由3395140 bp组成,GC含量为57.97%,有3368个基因,包括3267个蛋白质编码基因、6个rRNA基因和56个tRNA基因。根据综合抗生素抗性数据库,237个预测的基因产物与ARG相关,其中44个大环内酯类抗生素相关基因(19%)是最大的一组。该数据集将有助于该属的形态鉴定、比较基因组分析和ARG研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53a5/11068547/51844fa204c6/gr1.jpg

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