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通过基于配体和基于结构的虚拟筛选与实验验证相结合发现新型醛糖还原酶抑制剂

Discovery of Novel Aldose Reductase Inhibitors via the Integration of Ligand-Based and Structure-Based Virtual Screening with Experimental Validation.

作者信息

Yasir Muhammad, Park Jinyoung, Chun Wanjoo

机构信息

Department of Pharmacology, Kangwon National University School of Medicine, Chuncheon 24341, Republic of Korea.

出版信息

ACS Omega. 2024 Apr 23;9(18):20338-20349. doi: 10.1021/acsomega.4c00820. eCollection 2024 May 7.

DOI:10.1021/acsomega.4c00820
PMID:38737046
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11079907/
Abstract

Aldose reductase plays a central role in diabetes mellitus (DM) associated complications by converting glucose to sorbitol, resulting in a harmful increase of reactive oxygen species (ROS) in various tissues, such as the heart, vasculature, neurons, eyes, and kidneys. We employed a comprehensive approach, integrating both ligand- and structure-based virtual screening followed by experimental validation. Initially, candidate compounds were extracted from extensive drug and chemical libraries using the DeepChem's GraphConvMol algorithm, leveraging its capacity for robust molecular feature representation. Subsequent refinement employed molecular docking and molecular dynamics (MD) simulations, which are crucial for understanding compound-receptor interactions and dynamic behavior in a simulated physiological environment. Finally, the candidate compounds were subjected to experimental validation of their biological activity using an aldose reductase inhibitor screening kit. The comprehensive approach led to the identification of a promising compound, demonstrating significant potential as an aldose reductase inhibitor. This comprehensive approach not only yields a potential therapeutic intervention for DM-related complications but also establishes an integrated protocol for drug development, setting a new benchmark in the field.

摘要

醛糖还原酶通过将葡萄糖转化为山梨醇,在糖尿病(DM)相关并发症中起核心作用,导致心脏、血管、神经元、眼睛和肾脏等各种组织中活性氧(ROS)有害增加。我们采用了一种综合方法,将基于配体和基于结构的虚拟筛选相结合,随后进行实验验证。最初,使用DeepChem的GraphConvMol算法从大量药物和化学库中提取候选化合物,利用其强大的分子特征表示能力。随后的优化采用分子对接和分子动力学(MD)模拟,这对于理解化合物与受体的相互作用以及在模拟生理环境中的动态行为至关重要。最后,使用醛糖还原酶抑制剂筛选试剂盒对候选化合物的生物活性进行实验验证。这种综合方法导致鉴定出一种有前景的化合物,显示出作为醛糖还原酶抑制剂的巨大潜力。这种综合方法不仅为糖尿病相关并发症产生了一种潜在的治疗干预措施,而且还建立了一种药物开发的综合方案,为该领域设定了新的基准。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2c/11079907/1e7687476f64/ao4c00820_0010.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2c/11079907/b48980348e7a/ao4c00820_0001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2c/11079907/d1c985c6109a/ao4c00820_0003.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2c/11079907/a5d4a9621e91/ao4c00820_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2c/11079907/48073b92d139/ao4c00820_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2c/11079907/a86d5ea3d94e/ao4c00820_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2c/11079907/67eb005029bc/ao4c00820_0008.jpg
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