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深入了解新型粪肠球菌噬菌体:全面的基因组分析。

Insights into the novel Enterococcus faecalis phage: A comprehensive genome analysis.

机构信息

Department of Microbial Biotechnology, Faculty of Basic Sciences and Advanced Technologies in Biology, University of Science and Culture, Tehran, Iran.

Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.

出版信息

PLoS One. 2024 May 14;19(5):e0301292. doi: 10.1371/journal.pone.0301292. eCollection 2024.

DOI:10.1371/journal.pone.0301292
PMID:38743671
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11093359/
Abstract

Enterococcus faecalis, a Gram-positive bacterium, poses a significant clinical challenge owing to its intrinsic resistance to a broad spectrum of antibiotics, warranting urgent exploration of innovative therapeutic strategies. This study investigated the viability of phage therapy as an alternative intervention for antibiotic-resistant E. faecalis, with a specific emphasis on the comprehensive genomic analysis of bacteriophage SAM-E.f 12. The investigation involved whole-genome sequencing of SAM-E.f 12 using Illumina technology, resulting in a robust dataset for detailed genomic characterization. Bioinformatics analyses were employed to predict genes and assign functional annotations. The bacteriophage SAM-E.f 12, which belongs to the Siphoviridae family, exhibited substantial potential, with a burst size of 5.7 PFU/infected cells and a latent period of 20 min. Host range determination experiments demonstrated its effectiveness against clinical E. faecalis strains, positioning SAM-E.f 12 as a precise therapeutic agent. Stability assays underscore resilience across diverse environmental conditions. This study provides a comprehensive understanding of SAM-E.f 12 genomic composition, lytic lifecycle parameters, and practical applications, particularly its efficacy in murine wound models. These results emphasize the promising role of phage therapy, specifically its targeted approach against antibiotic-resistant E. faecalis strains. The nuanced insights derived from this research will contribute to the ongoing pursuit of efficacious phage therapies and offer valuable implications for addressing the clinical challenges associated with E. faecalis infections.

摘要

屎肠球菌是一种革兰氏阳性细菌,由于其对广谱抗生素的固有耐药性,给临床带来了巨大挑战,因此迫切需要探索创新的治疗策略。本研究探讨了噬菌体治疗作为治疗抗生素耐药屎肠球菌的一种替代方法的可行性,特别关注对噬菌体 SAM-E.f 12 的全面基因组分析。使用 Illumina 技术对 SAM-E.f 12 进行全基因组测序,获得了用于详细基因组特征描述的强大数据集。通过生物信息学分析预测基因并分配功能注释。噬菌体 SAM-E.f 12 属于长尾噬菌体科,具有很大的潜力,其爆发大小为 5.7 PFU/感染细胞,潜伏期为 20 分钟。宿主范围测定实验表明,它对临床屎肠球菌菌株有效,将 SAM-E.f 12 定位为一种精确的治疗剂。稳定性测定强调了其在各种环境条件下的弹性。本研究全面了解了 SAM-E.f 12 的基因组组成、裂解生命周期参数和实际应用,特别是其在小鼠伤口模型中的疗效。这些结果强调了噬菌体治疗的有前途的作用,特别是针对抗生素耐药屎肠球菌菌株的靶向方法。本研究得出的细微见解将有助于持续探索有效的噬菌体治疗方法,并为解决与屎肠球菌感染相关的临床挑战提供有价值的启示。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/149c/11093359/e2e7600330ab/pone.0301292.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/149c/11093359/1fc5cd6c0d37/pone.0301292.g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/149c/11093359/e2e7600330ab/pone.0301292.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/149c/11093359/1fc5cd6c0d37/pone.0301292.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/149c/11093359/b04ec98be64b/pone.0301292.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/149c/11093359/5f4e85965f51/pone.0301292.g003.jpg
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Prevalence of vancomycin-resistant Enterococci in India between 2000 and 2022: a systematic review and meta-analysis.2000 年至 2022 年期间印度万古霉素耐药肠球菌的流行情况:系统评价和荟萃分析。
Antimicrob Resist Infect Control. 2023 Aug 21;12(1):79. doi: 10.1186/s13756-023-01287-z.
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