Suppr超能文献

APOST - 3D:来自波函数分析的化学概念。

APOST-3D: Chemical concepts from wavefunction analysis.

作者信息

Salvador P, Ramos-Cordoba E, Montilla M, Pujal L, Gimferrer M

机构信息

Institut de Química Computacional i Catàlisi i Departament de Química, Universitat de Girona, Maria Aurèlia Capmany i Farnés 69, 17003 Girona, Catalonia, Spain.

Donostia International Physics Center (DIPC), 20018 Donostia, Euskadi, Spain.

出版信息

J Chem Phys. 2024 May 7;160(17). doi: 10.1063/5.0206187.

Abstract

Open-source APOST-3D software features a large number of wavefunction analysis tools developed over the past 20 years, aiming at connecting classical chemical concepts with the electronic structure of molecules. APOST-3D relies on the identification of the atom in the molecule (AIM), and several analysis tools are implemented in the most general way so that they can be used in combination with any chosen AIM. Several Hilbert-space and real-space (fuzzy atom) AIM definitions are implemented. In general, global quantities are decomposed into one- and two-center terms, which can also be further grouped into fragment contributions. Real-space AIM methods involve numerical integrations, which are particularly costly for energy decomposition schemes. The current version of APOST-3D features several strategies to minimize numerical error and improve task parallelization. In addition to conventional population analysis of the density and other scalar fields, APOST-3D implements different schemes for oxidation state assignment (effective oxidation state and oxidation states localized orbitals), molecular energy decomposition schemes, and local spin analysis. The APOST-3D platform offers a user-friendly interface and a comprehensive suite of state-of-the-art tools to bridge the gap between theory and experiment, representing a valuable resource for both seasoned computational chemists and researchers with a focus on experimental work. We provide an overview of the code structure and its capabilities, together with illustrative examples.

摘要

开源的APOST-3D软件具有大量在过去20年中开发的波函数分析工具,旨在将经典化学概念与分子的电子结构联系起来。APOST-3D依赖于分子中原子的识别(AIM),并且以最通用的方式实现了几种分析工具,以便它们可以与任何选定的AIM结合使用。实现了几种希尔伯特空间和实空间(模糊原子)AIM定义。一般来说,全局量被分解为单中心和双中心项,这些项也可以进一步分组为片段贡献。实空间AIM方法涉及数值积分,这对于能量分解方案来说成本特别高。APOST-3D的当前版本具有几种策略来最小化数值误差并改善任务并行化。除了对密度和其他标量场进行常规的布居分析外,APOST-3D还实现了不同的氧化态分配方案(有效氧化态和局域轨道氧化态)、分子能量分解方案和局部自旋分析。APOST-3D平台提供了一个用户友好的界面和一套全面的先进工具,以弥合理论与实验之间的差距,对于经验丰富的计算化学家以及专注于实验工作的研究人员来说都是宝贵的资源。我们提供了代码结构及其功能的概述,并配有示例说明。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验