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计算具有少数网状顶点的系统发生网络:虫瘿和网状可见网络。

Counting Phylogenetic Networks with Few Reticulation Vertices: Galled and Reticulation-Visible Networks.

机构信息

Department of Mathematical Sciences, National Chengchi University, Taipei, 116, Taiwan.

出版信息

Bull Math Biol. 2024 May 18;86(7):76. doi: 10.1007/s11538-024-01309-w.

Abstract

We give exact and asymptotic counting results for the number of galled networks and reticulation-visible networks with few reticulation vertices. Our results are obtained with the component graph method, which was introduced by L. Zhang and his coauthors, and generating function techniques. For galled networks, we in addition use analytic combinatorics. Moreover, in an appendix, we consider maximally reticulated reticulation-visible networks and derive their number, too.

摘要

我们给出了具有少数网络顶点的带节瘤网络和可见网络的精确和渐近计数结果。我们的结果是使用由 L. Zhang 和他的合著者引入的组成图方法和生成函数技术获得的。对于带节瘤网络,我们还使用了分析组合学。此外,在附录中,我们还考虑了最大的完全联网可见网络,并推导出了它们的数量。

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