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ForenSeq® Kintelligence 试剂盒、MiSeq FGx® 测序系统和 ForenSeq 通用分析软件的开发验证。

Developmental validation of the ForenSeq® Kintelligence kit, MiSeq FGx® sequencing system and ForenSeq Universal Analysis Software.

机构信息

Verogen, Inc., now a QIAGEN company, 11111 Flintkote Ave., San Diego, CA 92121, USA.

University of Helsinki, Department of Forensic Medicine, Haartmaninkatu 8, P.O. Box 63, Helsinki 00014, Finland; Forensic Science Institute, Radford University, Radford, VA 24142, USA.

出版信息

Forensic Sci Int Genet. 2024 Jul;71:103055. doi: 10.1016/j.fsigen.2024.103055. Epub 2024 Apr 30.

DOI:10.1016/j.fsigen.2024.103055
PMID:38762965
Abstract

Forensic Investigative Genetic Genealogy, a recent sub discipline of forensic genomics, leverages the high throughput and sensitivity of detection of next generation sequencing and established genetic and genealogical approaches to support the identification of human remains from missing persons investigations and investigative lead generation in violent crimes. To facilitate forensic DNA evidence analysis, the ForenSeq® Kintelligence multiplex, consisting of 10,230 SNPs, was developed. Design of the ForenSeq Kintelligence Kit, the MiSeq FGx® Sequencing System and the ForenSeq Universal Analysis Software is described. Developmental validation in accordance with SWGDAM guidelines and forensic quality assurance standards, using single source samples, is reported for the end-to-end workflow from library preparation to data interpretation. Performance metrics support the conclusion that more genetic information can be obtained from challenging samples compared to other commercially available forensic targeted DNA assays developed for capillary electrophoresis (CE) or other current next generation sequencing (NGS) kits due to the higher number of markers, the overall shorter amplicon sizes (97.8% <150 bp), and kit design. Data indicate that the multiplex is robust and fit for purpose for a wide range of quantity and quality samples. The ForenSeq Kintelligence Kit and the Universal Analysis Software allow transfer of the genetic component of forensic investigative genetic genealogy to the operational forensic laboratory.

摘要

法医调查遗传基因学是法医学基因组学的一个新兴分支,利用下一代测序的高通量和高灵敏度,以及既定的遗传和家谱学方法,支持从失踪人员调查和暴力犯罪调查中识别人类遗骸,并为调查提供线索。为了便于法医 DNA 证据分析,开发了包含 10230 个 SNP 的 ForenSeq® Kintelligence 多重检测试剂盒。本文介绍了 ForenSeq Kintelligence 试剂盒、MiSeq FGx® 测序系统和 ForenSeq 通用分析软件的设计。根据 SWGDAM 指南和法医质量保证标准,使用单一来源的样本进行了开发验证,报告了从文库制备到数据解释的端到端工作流程。性能指标支持这样的结论,即与为毛细管电泳 (CE) 或其他当前的下一代测序 (NGS) 试剂盒开发的其他商业上可用的法医靶向 DNA 检测方法相比,从具有挑战性的样本中可以获得更多的遗传信息,这是因为该试剂盒具有更高数量的标记物、总体上更短的扩增子大小(97.8%<150bp)和试剂盒设计。数据表明,该多重检测试剂盒具有很强的稳健性和适用性,适用于广泛的样本数量和质量。ForenSeq Kintelligence 试剂盒和通用分析软件将法医调查遗传基因学的遗传部分转移到了法医实验室。

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