Masella Michel, Léonforté Fabien
Laboratoire de Biologie Structurale et Radiobiologie, Service de Bioénergétique, Biologie Structurale et Mécanismes, Institut de Biologie et de Technologies de Saclay, CEA Saclay, F-91191 Gif sur Yvette Cedex, France.
L'Oréal Group, Research and Innovation, Aulnay-Sous-Bois, France.
J Chem Phys. 2024 May 28;160(20). doi: 10.1063/5.0194968.
We discuss key parameters that affect the reliability of hybrid simulations in the aqueous phase based on an efficient multi-scale coarse-grained polarizable pseudo-particle approach, denoted as pppl, to model the solvent water, whereas solutes are modeled using an all atom polarizable force field. Among those parameters, the extension of the solvent domain (SD) at the solute vicinity (domain in which each solvent particle corresponds to a single water molecule) and the magnitude of solute/solvent short range polarization damping effects are shown to be pivotal to model NaCl salty aqueous solutions and the hydration of charged systems, such as the hydrophobic polyelectrolyte polymer that we have recently investigated [Masella et al., J. Chem. Phys. 155, 114903 (2021)]. Strong short range damping is pivotal to simulate aqueous salt NaCl solutions at moderate concentration (up to 1.0M). The SD extension (as well as short range damping) has a weak effect on the polymer conformation; however, it plays a pivotal role in computing accurate polymer/solvent interaction energies. As the pppl approach is up to two orders of magnitude computationally more efficient than all atom polarizable force field methods, our results show it to be an efficient alternative route to investigate the equilibrium properties of complex charged molecular systems in extended chemical environments.
我们基于一种高效的多尺度粗粒度可极化伪粒子方法(记为pppl)讨论了影响水相中混合模拟可靠性的关键参数,该方法用于对溶剂水进行建模,而溶质则使用全原子可极化力场进行建模。在这些参数中,溶质附近溶剂域(SD)(其中每个溶剂粒子对应一个单个水分子的域)的扩展以及溶质/溶剂短程极化阻尼效应的大小被证明对于模拟NaCl盐水溶液和带电系统的水合作用至关重要,例如我们最近研究的疏水性聚电解质聚合物[Masella等人,《化学物理杂志》155, 114903 (2021)]。强短程阻尼对于模拟中等浓度(高达1.0M)的NaCl盐水溶液至关重要。SD扩展(以及短程阻尼)对聚合物构象的影响较弱;然而,它在计算准确的聚合物/溶剂相互作用能方面起着关键作用。由于pppl方法在计算上比全原子可极化力场方法高效多达两个数量级,我们的结果表明它是研究扩展化学环境中复杂带电分子系统平衡性质的一种有效替代途径。