• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

多尺度可极化伪粒子溶剂粗粒化方法:从氯化钠盐溶液到聚电解质水合作用

The multi-scale polarizable pseudo-particle solvent coarse-grained approach: From NaCl salt solutions to polyelectrolyte hydration.

作者信息

Masella Michel, Léonforté Fabien

机构信息

Laboratoire de Biologie Structurale et Radiobiologie, Service de Bioénergétique, Biologie Structurale et Mécanismes, Institut de Biologie et de Technologies de Saclay, CEA Saclay, F-91191 Gif sur Yvette Cedex, France.

L'Oréal Group, Research and Innovation, Aulnay-Sous-Bois, France.

出版信息

J Chem Phys. 2024 May 28;160(20). doi: 10.1063/5.0194968.

DOI:10.1063/5.0194968
PMID:38780384
Abstract

We discuss key parameters that affect the reliability of hybrid simulations in the aqueous phase based on an efficient multi-scale coarse-grained polarizable pseudo-particle approach, denoted as pppl, to model the solvent water, whereas solutes are modeled using an all atom polarizable force field. Among those parameters, the extension of the solvent domain (SD) at the solute vicinity (domain in which each solvent particle corresponds to a single water molecule) and the magnitude of solute/solvent short range polarization damping effects are shown to be pivotal to model NaCl salty aqueous solutions and the hydration of charged systems, such as the hydrophobic polyelectrolyte polymer that we have recently investigated [Masella et al., J. Chem. Phys. 155, 114903 (2021)]. Strong short range damping is pivotal to simulate aqueous salt NaCl solutions at moderate concentration (up to 1.0M). The SD extension (as well as short range damping) has a weak effect on the polymer conformation; however, it plays a pivotal role in computing accurate polymer/solvent interaction energies. As the pppl approach is up to two orders of magnitude computationally more efficient than all atom polarizable force field methods, our results show it to be an efficient alternative route to investigate the equilibrium properties of complex charged molecular systems in extended chemical environments.

摘要

我们基于一种高效的多尺度粗粒度可极化伪粒子方法(记为pppl)讨论了影响水相中混合模拟可靠性的关键参数,该方法用于对溶剂水进行建模,而溶质则使用全原子可极化力场进行建模。在这些参数中,溶质附近溶剂域(SD)(其中每个溶剂粒子对应一个单个水分子的域)的扩展以及溶质/溶剂短程极化阻尼效应的大小被证明对于模拟NaCl盐水溶液和带电系统的水合作用至关重要,例如我们最近研究的疏水性聚电解质聚合物[Masella等人,《化学物理杂志》155, 114903 (2021)]。强短程阻尼对于模拟中等浓度(高达1.0M)的NaCl盐水溶液至关重要。SD扩展(以及短程阻尼)对聚合物构象的影响较弱;然而,它在计算准确的聚合物/溶剂相互作用能方面起着关键作用。由于pppl方法在计算上比全原子可极化力场方法高效多达两个数量级,我们的结果表明它是研究扩展化学环境中复杂带电分子系统平衡性质的一种有效替代途径。

相似文献

1
The multi-scale polarizable pseudo-particle solvent coarse-grained approach: From NaCl salt solutions to polyelectrolyte hydration.多尺度可极化伪粒子溶剂粗粒化方法:从氯化钠盐溶液到聚电解质水合作用
J Chem Phys. 2024 May 28;160(20). doi: 10.1063/5.0194968.
2
Hybrid polarizable simulations of a conventional hydrophobic polyelectrolyte. Toward a theoretical tool for green science innovation.常规疏水型聚电解质的混合极化模拟。走向绿色科学创新的理论工具。
J Chem Phys. 2021 Sep 21;155(11):114903. doi: 10.1063/5.0056508.
3
Combining a polarizable force-field and a coarse-grained polarizable solvent model. II. Accounting for hydrophobic effects.结合极化力场和粗粒化可极化溶剂模型。二. 疏水效应的考虑。
J Comput Chem. 2011 Sep;32(12):2664-78. doi: 10.1002/jcc.21846. Epub 2011 Jun 6.
4
A multiscale coarse-grained polarizable solvent model for handling long tail bulk electrostatics.一种用于处理长链体静电的多尺度粗粒化极化溶剂模型。
J Comput Chem. 2013 May 15;34(13):1112-24. doi: 10.1002/jcc.23237. Epub 2013 Feb 5.
5
Enthalpy-entropy contributions to salt and osmolyte effects on molecular-scale hydrophobic hydration and interactions.焓熵对盐和渗透溶质影响分子尺度疏水水合及相互作用的贡献。
J Phys Chem B. 2008 May 8;112(18):5661-70. doi: 10.1021/jp073485n.
6
Hydration Properties and Solvent Effects for All-Atom Solutes in Polarizable Coarse-Grained Water.可极化粗粒度水中全原子溶质的水合性质及溶剂效应
J Phys Chem B. 2016 Aug 25;120(33):8102-14. doi: 10.1021/acs.jpcb.6b00399. Epub 2016 Mar 1.
7
A methane-water model for coarse-grained simulations of solutions and clathrate hydrates.一种用于模拟溶液和笼型水合物的粗粒化模拟的甲烷-水模型。
J Phys Chem B. 2010 Jun 3;114(21):7302-11. doi: 10.1021/jp1013576.
8
Combining a polarizable force-field and a coarse-grained polarizable solvent model: application to long dynamics simulations of bovine pancreatic trypsin inhibitor.结合可极化力场和粗粒度可极化溶剂模型:应用于牛胰蛋白酶抑制剂的长时间动力学模拟
J Comput Chem. 2008 Aug;29(11):1707-24. doi: 10.1002/jcc.20932.
9
Communication: Nucleation rates of supersaturated aqueous NaCl using a polarizable force field.通讯:使用极化力场研究过饱和水溶液中 NaCl 的成核速率。
J Chem Phys. 2018 Oct 14;149(14):141102. doi: 10.1063/1.5053652.
10
Conformational Properties of Sodium Polystyrenesulfonate in Water: Insights from a Coarse-Grained Model with Explicit Solvent.聚对苯乙烯磺酸钠在水中的构象性质:来自含显式溶剂的粗粒度模型的见解
J Phys Chem B. 2015 Aug 27;119(34):11010-8. doi: 10.1021/acs.jpcb.5b01700. Epub 2015 Jun 22.