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小分子与 DNA 适体结合的动力学 ITC 及其在结合分析和生物传感器中的应用。

Kinetic ITC of DNA Aptamers Binding for Small Molecules and Implications for Binding Assays and Biosensors.

机构信息

Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada.

出版信息

Chembiochem. 2024 Aug 1;25(15):e202400225. doi: 10.1002/cbic.202400225. Epub 2024 Jul 5.

Abstract

The determination of k and k values through kinetic analysis is crucial for understanding the intricacies of aptamer-target binding interactions. By employing kinetic ITC, we systematically analyzed a range of ITC data of various aptamers. Upon plotting their k and k values as a function of their K values, a notable trend emerged. Across a range of K values spanning from 28 nM to 864 μM, the k value decreased from 2×10 M s to 96 M s, whereas the k value increased from 1.03×10 s to 0.012 s. Thus, both k and k contributed to the change of K in the same direction, although the range of k change was larger. Since experiments are often run at close to the K value, this concentration effect also played an important role in the observed binding kinetics. The effect of these kinetic parameters on two common sensing mechanisms, including aptamer beacons and strand-displacement assays, are discussed. This work has provided the kinetic values of small molecule binding aptamers and offered insights into aptamer-based biosensors.

摘要

通过动力学分析确定 k 和 k 值对于理解适体-靶标结合相互作用的复杂性至关重要。通过使用动力学 ITC,我们系统地分析了一系列不同适体的 ITC 数据。当将 k 和 k 值作为其 K 值的函数作图时,出现了一个显著的趋势。在 28 nM 到 864 μM 的一系列 K 值范围内,k 值从 2×10 M s 降低到 96 M s,而 k 值从 1.03×10 s 增加到 0.012 s。因此,尽管 k 值的变化范围更大,但 k 和 k 都导致 K 值朝着相同的方向变化。由于实验通常在接近 K 值的条件下进行,因此这种浓度效应也在观察到的结合动力学中起着重要作用。讨论了这些动力学参数对两种常见传感机制(适体信标和链置换分析)的影响。这项工作提供了小分子结合适体的动力学值,并为基于适体的生物传感器提供了深入的了解。

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