Bakó Imre, Jicsinszky László, Pothoczki Szilvia
HUN-REN Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.
Dipartimento di Scienza e Tecnologia del Farmaco, University of Turin, Via P. Giuria, 9, 10125 Turin, Italy.
Molecules. 2024 May 8;29(10):2205. doi: 10.3390/molecules29102205.
In this work, comprehensive ab initio quantum chemical calculations using the DFT level of theory were performed to characterize the stabilization interactions (H-bonding and hyperconjugation effects) of two stable symmetrical conformations of α-, β-, and γ-cyclodextrins (CDs). For this purpose, we analyzed the electron density using "Atom in molecules" (AIM), "Natural Bond Orbital" (NBO), and energy decomposition method (CECA) in 3D and in Hilbert space. We also calculated the H-bond lengths and OH vibrational frequencies. In every investigated CD, the quantum chemical descriptors characterizing the strength of the interactions between the H-bonds of the primary OH (or hydroxymethyl) and secondary OH groups are examined by comparing the same quantity calculated for ethylene glycol, α-d-glucose (α-d-Glcp) and a water cluster as reference systems. By using these external standards, we can characterize more quantitatively the properties of these bonds (e.g., strength). We have demonstrated that bond critical points (BCP) of intra-unit H-bonds are absent in cyclodextrins, similar to α-d-Glcp and ethylene glycol. In contrast, the CECA analysis showed the existence of an exchange (bond-like) interaction between the interacting O…H atoms. Consequently, the exchange interaction refers to a chemical bond, namely the H-bond between two atoms, unlike BCP, which is not suitable for its detection.
在本工作中,使用密度泛函理论(DFT)水平进行了全面的从头算量子化学计算,以表征α-、β-和γ-环糊精(CDs)两种稳定对称构象的稳定相互作用(氢键和超共轭效应)。为此,我们在三维空间和希尔伯特空间中使用“分子中的原子”(AIM)、“自然键轨道”(NBO)和能量分解方法(CECA)分析了电子密度。我们还计算了氢键长度和OH振动频率。在每个研究的环糊精中,通过比较以乙二醇、α-D-葡萄糖(α-D-Glcp)和水簇作为参考体系计算得到的相同量,研究了表征一级OH(或羟甲基)和二级OH基团之间氢键相互作用强度的量子化学描述符。通过使用这些外部标准,我们可以更定量地表征这些键的性质(例如强度)。我们已经证明,与α-D-Glcp和乙二醇类似,环糊精中不存在单元内氢键的键临界点(BCP)。相反,CECA分析表明,相互作用的O…H原子之间存在交换(类键)相互作用。因此,与不适用于检测氢键的BCP不同,交换相互作用指的是一种化学键,即两个原子之间的氢键。