Etikyala Umadevi, Reddyrajula Rajkumar, Vani T, Kuchana Vinutha, Dalimba Udayakumar, Manga Vijjulatha
Medicinal Chemistry Laboratory, Department of Chemistry, Osmania University, Hyderabad, 500076, India.
Central Research Facility, National Institute of Technology Karnataka, Surathkal, Mangalore, 575025, India.
Mol Divers. 2025 Apr;29(2):1009-1032. doi: 10.1007/s11030-024-10887-9. Epub 2024 May 26.
Akt1 (protein kinase B) has become a major focus of attention due to its significant functionality in a variety of cellular processes and the inhibition of Akt1 could lead to a decrease in tumour growth effectively in cancer cells. In the present work, we discovered a set of novel Akt1 inhibitors by using multiple computational techniques, i.e. pharmacophore-based virtual screening, molecular docking, binding free energy calculations, and ADME properties. A five-point pharmacophore hypothesis was implemented and validated with AADRR38. The obtained R and Q values are in the acceptable region with the values of 0.90 and 0.64, respectively. The generated pharmacophore model was employed for virtual screening to find out the potential Akt1 inhibitors. Further, the selected hits were subjected to molecular docking, binding free energy analysis, and refined using ADME properties. Also, we designed a series of 6-methoxybenzo[b]oxazole analogues by comprising the structural characteristics of the hits acquired from the database. Molecules D1-D10 were found to have strong binding interactions and higher binding free energy values. In addition, Molecular dynamic simulation was performed to understand the conformational changes of protein-ligand complex.
Akt1(蛋白激酶B)因其在多种细胞过程中的重要功能而成为主要关注焦点,抑制Akt1可有效降低癌细胞中的肿瘤生长。在本研究中,我们使用多种计算技术,即基于药效团的虚拟筛选、分子对接、结合自由能计算和ADME性质,发现了一组新型Akt1抑制剂。实施了五点药效团假设并用AADRR38进行了验证。得到的R值和Q值分别为0.90和0.64,处于可接受区域。所生成的药效团模型用于虚拟筛选以找出潜在的Akt1抑制剂。此外,对选定的命中物进行分子对接、结合自由能分析,并利用ADME性质进行优化。我们还通过包含从数据库中获得的命中物的结构特征设计了一系列6-甲氧基苯并[b]恶唑类似物。发现分子D1-D10具有强结合相互作用和更高的结合自由能值。此外,进行了分子动力学模拟以了解蛋白质-配体复合物的构象变化。