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生物图像分析博士后培训项目

A Postdoctoral Training Program in Bioimage Analysis.

作者信息

Cimini Beth A, Tromans-Coia Callum, Stirling David, Sivagurunathan Suganya, Senft Rebecca, Ryder Pearl, Miglietta Esteban, Llanos Paula, Jamali Nasim, Diaz-Rohrer Barbara, Dasgupta Shatavisha, Cruz Mario, Weisbart Erin, Carpenter Anne E

机构信息

Imaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.

出版信息

bioRxiv. 2024 May 15:2024.05.13.593910. doi: 10.1101/2024.05.13.593910.

DOI:10.1101/2024.05.13.593910
PMID:38798545
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11118354/
Abstract

We herein describe a postdoctoral training program designed to train biologists with microscopy experience in bioimage analysis. We detail the rationale behind the program, the various components of the training program, and outcomes in terms of works produced and the career effects on past participants. We analyze the results of an anonymous survey distributed to past and present participants, indicating overall high value of all 12 rated aspects of the program, but significant heterogeneity in which aspects were most important to each participant. Finally, we propose this model as a template for other programs which may want to train experts in professional skill sets, and discuss the important considerations when running such a program. We believe that such programs can have extremely positive impact for both the trainees themselves and the broader scientific community.

摘要

我们在此描述了一个博士后培训项目,旨在培养具有显微镜经验的生物学家进行生物图像分析。我们详细阐述了该项目背后的原理、培训项目的各个组成部分,以及在产出的作品和对过去参与者的职业影响方面的成果。我们分析了一项分发给过去和现在参与者的匿名调查结果,表明该项目所有12个被评估方面的整体价值都很高,但每个参与者认为最重要的方面存在显著异质性。最后,我们提出这个模式作为其他可能希望培养专业技能专家的项目的模板,并讨论运行此类项目时的重要考虑因素。我们相信,这样的项目对受训者本人和更广泛的科学界都能产生极其积极的影响。

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1
A Postdoctoral Training Program in Bioimage Analysis.生物图像分析博士后培训项目
bioRxiv. 2024 May 15:2024.05.13.593910. doi: 10.1101/2024.05.13.593910.
2
A postdoctoral training program in bioimage analysis.生物影像分析博士后培训计划。
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本文引用的文献

1
Recognising the importance and impact of Imaging Scientists: Global guidelines for establishing career paths within core facilities.认识到影像科学家的重要性和影响:核心设施内建立职业道路的全球指南。
J Microsc. 2024 Jun;294(3):397-410. doi: 10.1111/jmi.13307. Epub 2024 May 1.
2
Bridging imaging users to imaging analysis - A community survey.将成像用户与成像分析联系起来 - 一项社区调查。
J Microsc. 2024 Dec;296(3):199-213. doi: 10.1111/jmi.13229. Epub 2023 Oct 12.
3
Challenges and opportunities for bioimage analysis core-facilities.
生物图像分析核心设施面临的挑战与机遇
J Microsc. 2024 Jun;294(3):338-349. doi: 10.1111/jmi.13192. Epub 2023 Jun 7.
4
The challenges and opportunities of open-access microscopy facilities.开放存取显微镜设施的挑战与机遇。
J Microsc. 2024 Jun;294(3):386-396. doi: 10.1111/jmi.13176. Epub 2023 Mar 5.
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A Hitchhiker's guide through the bio-image analysis software universe.生物影像分析软件世界的漫游指南。
FEBS Lett. 2022 Oct;596(19):2472-2485. doi: 10.1002/1873-3468.14451. Epub 2022 Jul 29.
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How tech-savvy employees make the difference in core facilities: Recognizing core facility expertise with dedicated career tracks: Recognizing core facility expertise with dedicated career tracks.精通技术的员工如何在核心设施方面发挥作用:通过专门的职业发展路径认可核心设施专业知识:通过专门的职业发展路径认可核心设施专业知识。
EMBO Rep. 2022 Jun 7;23(6):e55094. doi: 10.15252/embr.202255094. Epub 2022 Jun 1.
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Meeting in the Middle: Towards Successful Multidisciplinary Bioimage Analysis Collaboration.达成共识:迈向成功的多学科生物图像分析合作
Front Bioinform. 2022 Apr;2. doi: 10.3389/fbinf.2022.889755. Epub 2022 Apr 14.
8
2020 BioImage Analysis Survey: Community experiences and needs for the future.2020年生物图像分析调查:社区经验与未来需求
Biol Imaging. 2022;1. doi: 10.1017/S2633903X21000039. Epub 2021 Nov 12.
9
CellProfiler 4: improvements in speed, utility and usability.CellProfiler 4:在速度、实用性和易用性方面的改进。
BMC Bioinformatics. 2021 Sep 10;22(1):433. doi: 10.1186/s12859-021-04344-9.
10
Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists.2016-2020 年 NEUBIAS 生物影像分析师培训学校亮点:分析师和生命科学家的成功案例和重要资产。
F1000Res. 2021 Apr 30;10:334. doi: 10.12688/f1000research.25485.1. eCollection 2021.