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α-肼基酸插入通过局部结构有序化调控溶液中肽的组装。

α-Hydrazino Acid Insertion Governs Peptide Organization in Solution by Local Structure Ordering.

作者信息

Kavčič Luka, Ilc Gregor, Wang Baifan, Vlahoviček-Kahlina Kristina, Jerić Ivanka, Plavec Janez

机构信息

Slovenian NMR Centre, National Institute of Chemistry, Ljubljana 1000, Slovenia.

EN-FIST Centre of Excellence, Ljubljana 1000, Slovenia.

出版信息

ACS Omega. 2024 May 8;9(20):22175-22185. doi: 10.1021/acsomega.4c00804. eCollection 2024 May 21.

Abstract

In this work, we have applied the concept of α-hydrazino acid insertion in a peptide sequence as a means of structurally organizing a potential protein-protein interactions (PPI) inhibitor. Hydrazino peptides characterized by the incorporation of an α-hydrazino acid at specific positions introduce an additional nitrogen atom into their backbone. This modification leads to a change in the electrostatic properties of the peptide and induces the restructuring of its hydrogen bonding network, resulting in conformational changes toward more stable structural motifs. Despite the successful use of synthetic hydrazino oligomers in binding to nucleic acids, the structural changes due to the incorporation of α-hydrazino acid into short natural peptides in solution are still poorly understood. Based on NMR data, we report structural models of p53-derived hydrazino peptides with elements of localized peptide structuring in the form of an α-, β-, or γ-turn as a result of hydrazino modification in the peptide backbone. The modifications could potentially lead to the preorganization of a helical secondary peptide structure in a solution that is favorable for binding to a biological receptor. Spectroscopically, we observed that the ensemble averaged rapidly interconverting conformations, including isomerization of the E-Z hydrazide bond. This further increases the adaptability by expanding the conformational space of hydrazine peptides as potential protein-protein interaction antagonists.

摘要

在本研究中,我们应用了在肽序列中插入α-肼基酸的概念,以此作为构建潜在蛋白质-蛋白质相互作用(PPI)抑制剂结构的一种手段。肼基肽的特征在于在特定位置掺入α-肼基酸,从而在其主链中引入一个额外的氮原子。这种修饰导致肽的静电性质发生变化,并诱导其氢键网络发生重组,进而使构象向更稳定的结构基序转变。尽管合成肼基低聚物已成功用于与核酸结合,但对于溶液中短天然肽掺入α-肼基酸所导致的结构变化仍知之甚少。基于核磁共振(NMR)数据,我们报道了p53衍生的肼基肽的结构模型,该模型由于肽主链中的肼基修饰而呈现出α-、β-或γ-转角形式的局部肽结构元件。这些修饰可能会在溶液中预先形成有利于与生物受体结合的螺旋二级肽结构。从光谱学角度来看,我们观察到整体平均的快速相互转化构象,包括E-Z酰肼键的异构化。这通过扩展肼基肽作为潜在蛋白质-蛋白质相互作用拮抗剂的构象空间,进一步提高了其适应性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/512e/11112695/e4455620cd70/ao4c00804_0001.jpg

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