Agyabeng-Dadzie Fiifi, Xiao Rui, Kissinger Jessica C
Department of Genetics, University of Georgia, Athens, GA 30602 USA.
Institute of Bioinformatics, University of Georgia, Athens, GA 30602 USA.
Curr Trop Med Rep. 2024;11(2):92-103. doi: 10.1007/s40475-024-00318-y. Epub 2024 Mar 23.
Here we highlight the significant contribution that genomics-based approaches have had on the field of research and the insights these approaches have generated into biology and transmission.
There are advances in genomics, genetic manipulation, gene expression, and single-cell technologies. New and better genome sequences have revealed variable sub-telomeric gene families and genes under selection. RNA expression data now include single-cell and post-infection time points. These data have provided insights into the life cycle and host-pathogen interactions. Antisense and ncRNA transcripts are abundant. The critical role of the dsRNA virus is becoming apparent.
The community's ability to identify genomic targets in the abundant, yet still lacking, collection of genomic data, combined with their increased ability to assess function via gene knock-out, is revolutionizing the field. Advances in the detection of virulence genes, surveillance, population genomics, recombination studies, and epigenetics are upon us.
在此,我们强调基于基因组学的方法在研究领域所做出的重大贡献,以及这些方法在生物学和传播方面所产生的见解。
基因组学、基因操作、基因表达和单细胞技术均有进展。新的、更好的基因组序列揭示了可变的亚端粒基因家族和处于选择中的基因。RNA表达数据现在包括单细胞和感染后时间点的数据。这些数据为生命周期和宿主-病原体相互作用提供了见解。反义RNA和非编码RNA转录本丰富。双链RNA病毒的关键作用正变得明显。
该领域在丰富但仍有欠缺的基因组数据集中识别基因组靶点的能力,以及通过基因敲除评估功能的能力不断增强,正在彻底改变这一领域。毒力基因检测、监测、群体基因组学、重组研究和表观遗传学方面的进展即将到来。