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微齿脂鲤科(脂鲤目)染色体中重复 DNA 和反转录元件序列的染色体定位及其对染色体进化过程的影响。

Chromosomal mapping of repetitive DNA and retroelement sequences and its implications for the chromosomal evolution process in Ctenoluciidae (Characiformes).

机构信息

Conservation and Evolutionary Biology, INPA, National Amazon Research Institute, Av. André Araújo, 2936, Petrópolis, CEP: 69067-375, Caixa Postal 2223, Manaus, 69060-001, Amazonas, Brazil.

Department of Genetics and Evolution, Federal University of São Carlos, São Carlos, SP, Brazil.

出版信息

BMC Ecol Evol. 2024 May 30;24(1):72. doi: 10.1186/s12862-024-02262-x.

DOI:10.1186/s12862-024-02262-x
PMID:38816840
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11138015/
Abstract

Ctenoluciidae is a Neotropical freshwater fish family composed of two genera, Ctenolucius (C. beani and C. hujeta) and Boulengerella (B. cuvieri, B. lateristriga, B. lucius, B. maculata, and B. xyrekes), which present diploid number conservation of 36 chromosomes and a strong association of telomeric sequences with ribosomal DNAs. In the present study, we performed chromosomal mapping of microsatellites and transposable elements (TEs) in Boulengerella species and Ctenolucius hujeta. We aim to understand how those sequences are distributed in these organisms' genomes and their influence on the chromosomal evolution of the group. Our results indicate that repetitive sequences may had an active role in the karyotypic diversification of this family, especially in the formation of chromosomal hotspots that are traceable in the diversification processes of Ctenoluciidae karyotypes. We demonstrate that (GATA)n sequences also accumulate in the secondary constriction formed by the 18 S rDNA site, which shows consistent size heteromorphism between males and females in all Boulengerella species, suggesting an initial process of sex chromosome differentiation.

摘要

栉虾虎鱼科是一个新热带淡水鱼类科,由两个属组成,即栉虾虎属(Ctenolucius 的 C. beani 和 C. hujeta)和波氏虾虎鱼属(Boulengerella 的 B. cuvieri、B. lateristriga、B. lucius、B. maculata 和 B. xyrekes),它们具有 36 条染色体的二倍体数保守性,并且端粒序列与核糖体 DNA 强烈关联。在本研究中,我们对波氏虾虎鱼属和栉虾虎属 C. hujeta 的物种进行了微卫星和转座元件 (TE) 的染色体作图。我们旨在了解这些序列在这些生物基因组中的分布方式及其对该组染色体进化的影响。我们的结果表明,重复序列可能在该科的染色体多样化中发挥了积极作用,尤其是在形成可追踪栉虾虎鱼科染色体多样化过程中的染色体热点方面。我们证明,(GATA)n 序列也在 18S rDNA 位点形成的次缢痕中积累,在所有波氏虾虎鱼属物种中,该位点在雄性和雌性之间表现出一致的大小异态性,表明性染色体分化的初始过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/6ec032e48506/12862_2024_2262_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/4e9a007f9401/12862_2024_2262_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/c88af117c96a/12862_2024_2262_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/b35a87a10e8b/12862_2024_2262_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/0722feb032eb/12862_2024_2262_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/4de1aa0c5d7c/12862_2024_2262_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/6ec032e48506/12862_2024_2262_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/4e9a007f9401/12862_2024_2262_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/c88af117c96a/12862_2024_2262_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/b35a87a10e8b/12862_2024_2262_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/0722feb032eb/12862_2024_2262_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/4de1aa0c5d7c/12862_2024_2262_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea0/11138015/6ec032e48506/12862_2024_2262_Fig6_HTML.jpg

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