Cui Yu, Hu Mengting, Zhou He, Guo Jiarui, Wang Qijia, Xu Zaihua, Chen Liyun, Zhang Wancong, Tang Shijie
Shantou University Medical College, Shantou, Guangdong, China.
Research Center of Translational Medicine, Second Affiliated Hospital of Shantou University Medical College, Shantou, Guangdong, China.
Front Genet. 2024 May 15;15:1385293. doi: 10.3389/fgene.2024.1385293. eCollection 2024.
Varicose veins (VV) are a common chronic venous disease that is influenced by multiple factors. It affects the quality of life of patients and imposes a huge economic burden on the healthcare system. This study aimed to use integrated analysis methods, including Mendelian randomization analysis, to identify potential pathogenic genes and drug targets for VV treatment.
This study conducted Summary-data-based Mendelian Randomization (SMR) analysis and colocalization analysis on data collected from genome-wide association studies and cis-expression quantitative trait loci databases. Only genes with PP.H4 > 0.7 in colocalization were chosen from the significant SMR results. After the above analysis, we screened 12 genes and performed Mendelian Randomization (MR) analysis on them. After sensitivity analysis, we identified four genes with potential causal relationships with VV. Finally, we used transcriptome-wide association studies and The Drug-Gene Interaction Database data to identify and screen the remaining genes and identified four drug targets for the treatment of VV.
We identified four genes significantly associated with VV, namely, [Odds ratio (OR) = 1.08, 95% Confidence interval (CI): 1.05-1.11, = 1.42e-10] and (OR = 1.13, 95% CI: 1.06-1.20, = 6.90e-5), (OR = 1.05, 95% CI: 1.01-1.11, = 1.42e-2) and (OR = 0.87, 95% CI: 0.81-0.95, = 3.67e-3). Increased expression of three genes, namely, , , and , was associated with increased risk of the disease, and increased expression of was associated with decreased risk of the disease. These four genes could be targeted for VV therapy.
We identified four potential causal proteins for varicose veins with MR. A comprehensive analysis indicated that , , , and might be potential drug targets for varicose veins.
静脉曲张(VV)是一种常见的慢性静脉疾病,受多种因素影响。它影响患者的生活质量,并给医疗系统带来巨大经济负担。本研究旨在使用包括孟德尔随机化分析在内的综合分析方法,确定VV治疗的潜在致病基因和药物靶点。
本研究对从全基因组关联研究和顺式表达定量性状位点数据库收集的数据进行基于汇总数据的孟德尔随机化(SMR)分析和共定位分析。仅从显著的SMR结果中选择共定位中PP.H4>0.7的基因。经过上述分析,我们筛选出12个基因并对其进行孟德尔随机化(MR)分析。经过敏感性分析,我们确定了4个与VV有潜在因果关系的基因。最后,我们使用全转录组关联研究和药物-基因相互作用数据库数据来识别和筛选其余基因,并确定了4个VV治疗的药物靶点。
我们确定了4个与VV显著相关的基因,即[比值比(OR)=1.08,95%置信区间(CI):1.05 - 1.11,P = 1.42e - 10]和(OR = 1.13,95%CI:1.06 - 1.20,P = 6.90e - 5),(OR = 1.05,95%CI:1.01 - 1.11,P = 1.42e - 2)和(OR = 0.87,95%CI:0.81 - 0.95,P = 3.67e - 3)。三个基因,即、和的表达增加与疾病风险增加相关,而的表达增加与疾病风险降低相关。这四个基因可作为VV治疗的靶点。
我们通过MR确定了4个静脉曲张的潜在因果蛋白。综合分析表明,、、和可能是静脉曲张的潜在药物靶点。