Lin Jianfeng, Zhou Jiawei, Liu Zhili, Zeng Rong, Wang Lei, Li Fangda, Cui Liqiang, Zheng Yuehong
Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Department of Vascular Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Front Cardiovasc Med. 2023 Jun 19;10:1126208. doi: 10.3389/fcvm.2023.1126208. eCollection 2023.
Varicose veins are a common chronic disease that creates a significant economic burden on the healthcare system. Current treatment options, including pharmacological treatments, are not always effective, and there is a need for more targeted therapies. A Mendelian randomization (MR) method uses genetic variants as instrumental variables to estimate the causal effect of an exposure on an outcome, and it has been successful in identifying therapeutic targets in other diseases. However, few studies have used MR to explore potential protein drug targets for varicose veins.
To identify potential drug targets for varicose veins of lower extremities, we undertook a comprehensive screen of plasma protein with a two-sample MR method. We used recently reported -variants as genetic instruments of 2,004 plasma proteins, then applied MR to a recent meta-analysis of genome-wide association study on varicose veins (22,037 cases and 437,665 controls). Furthermore, pleiotropy detection, reverse causality testing, colocalization analysis, and external replication were utilized to strengthen the causal effects of prioritized proteins. Phenome-wide MR (PheW-MR) of the prioritized proteins for the risk of 525 diseases was conducted to screen potential side effects.
We identified eight plasma proteins that are significantly associated with the risk of varicose veins after Bonferroni correction ( < 2.495 × 10), with five being protective (LUM, POSTN, RPN1, RSPO3, and VAT1) and three harmful (COLEC11, IRF3, and SARS2). Most identified proteins showed no pleiotropic effects except for COLLEC11. Bidirectional MR and MR Steiger testing excluded reverse causal relationship between varicose veins and prioritized proteins. The colocalization analysis indicated that COLEC11, IRF3, LUM, POSTN, RSPO3, and SARS2 shared the same causal variant with varicose veins. Finally, seven identified proteins replicated with alternative instruments except for VAT1. Furthermore, PheW-MR revealed that only IRF3 had potential harmful adverse side effects.
We identified eight potential causal proteins for varicose veins with MR. A comprehensive analysis indicated that IRF3, LUM, POSTN, RSPO3, and SARS2 might be potential drug targets for varicose veins.
静脉曲张是一种常见的慢性疾病,给医疗保健系统带来了巨大的经济负担。目前的治疗选择,包括药物治疗,并不总是有效,因此需要更有针对性的治疗方法。孟德尔随机化(MR)方法使用基因变异作为工具变量来估计暴露对结果的因果效应,并且已成功用于识别其他疾病的治疗靶点。然而,很少有研究使用MR来探索静脉曲张潜在的蛋白质药物靶点。
为了确定下肢静脉曲张的潜在药物靶点,我们采用两样本MR方法对血浆蛋白进行了全面筛选。我们使用最近报道的与2004种血浆蛋白相关的变异作为基因工具,然后将MR应用于最近一项关于静脉曲张的全基因组关联研究的荟萃分析(22037例病例和437665例对照)。此外,利用多效性检测、反向因果关系检验、共定位分析和外部验证来加强优先蛋白质的因果效应。对优先蛋白质进行525种疾病风险的全表型孟德尔随机化(PheW-MR)分析,以筛选潜在的副作用。
经过Bonferroni校正后(P < 2.495×10⁻⁵),我们确定了8种与静脉曲张风险显著相关的血浆蛋白,其中5种具有保护作用(LUM、POSTN、RPN1、RSPO3和VAT1),3种具有有害作用(COLEC11、IRF3和SARS2)。除COLLEC11外,大多数鉴定出的蛋白质未显示多效性。双向MR和MR Steiger检验排除了静脉曲张与优先蛋白质之间的反向因果关系。共定位分析表明,COLEC11、IRF3、LUM、POSTN、RSPO3和SARS2与静脉曲张共享相同的因果变异。最后,除VAT1外,7种鉴定出的蛋白质用替代工具进行了验证。此外,PheW-MR显示只有IRF3有潜在的有害副作用。
我们通过MR确定了8种静脉曲张潜在的因果蛋白。综合分析表明,IRF3、LUM、POSTN、RSPO3和SARS2可能是静脉曲张的潜在药物靶点。