Division of Medical Microbiology and Virology, St. Paul's Hospital, Vancouver, Canada; Department of Pathology and Laboratory Medicine, University British Columbia, Vancouver, Canada.
Division of Medical Microbiology and Virology, St. Paul's Hospital, Vancouver, Canada.
J Clin Virol. 2024 Aug;173:105697. doi: 10.1016/j.jcv.2024.105697. Epub 2024 May 27.
Molecular syndromic panels can improve rapidity of results and ease clinical laboratory workflow, although caution has been raised for potential false-positive results. Upon implementation of a new panel for infectious diarrhea (BioFire® FilmArray® Gastrointestinal [GI] Panel, bioMérieux) in our clinical laboratory, a higher than expected number of stool samples with norovirus were detected.
The goal of this study was to investigate positive percent agreement and the false-positive rate of norovirus detected by the multiplex BioFire GI panel compared to a singleplex commercial assay.
From October 2023 to January 2024, all prospective stool samples with a positive norovirus result by BioFire had melting curves reviewed manually using the BioFire FilmArray Torch System. Stool samples further underwent testing by a supplementary real-time RT-PCR assay (Xpert® Norovirus, Cepheid) for comparative analysis.
Of the 50 stool samples with norovirus detected by BioFire, 18 (36 %) tested negative by Xpert (deemed "false-positives"). Furthermore, melting curve analysis revealed nearly all of these samples had atypical melting curve morphologies for the "Noro-1" target on BioFire (16/18, 89 %), which was statistically significant (Odds Ratio 173.2, 95 % CI [22.2, 5326.9], p < 0.0001). Stool samples with multiple pathogens detected by BioFire including norovirus were not more likely to produce false-positive norovirus results (Odds Ratio 1, 95 % CI [0.3, 3.3], p = 1).
Although not described in the manufacturer's Instructions for Use, we propose routine manual review of melting curves for the BioFire GI panel prior to reporting, to mitigate potential false-positive norovirus results.
分子综合征面板可以提高结果的速度并简化临床实验室的工作流程,尽管已经对潜在的假阳性结果提出了警告。在我们的临床实验室实施新的传染性腹泻检测面板(BioFire® FilmArray® 胃肠道[GI]Panel,bioMérieux)后,我们发现粪便样本中诺如病毒的检测数量高于预期。
本研究的目的是调查与单一商业检测相比,多重 BioFire GI 面板检测到的诺如病毒的阳性百分比一致性和假阳性率。
2023 年 10 月至 2024 年 1 月,所有通过 BioFire 检测到诺如病毒阳性的前瞻性粪便样本,使用 BioFire FilmArray Torch System 手动审查熔解曲线。粪便样本进一步通过补充实时 RT-PCR 检测(Xpert® Norovirus,Cepheid)进行比较分析。
在通过 BioFire 检测到的 50 份诺如病毒粪便样本中,18 份(36%)通过 Xpert 检测为阴性(被认为是“假阳性”)。此外,熔解曲线分析显示,这些样本中几乎所有的 BioFire 上“Noro-1”靶标都具有非典型的熔解曲线形态(18/18,89%),这具有统计学意义(比值比 173.2,95%CI [22.2, 5326.9],p < 0.0001)。在 BioFire 检测到包括诺如病毒在内的多种病原体的粪便样本,其产生假阳性诺如病毒结果的可能性并不更高(比值比 1,95%CI [0.3, 3.3],p = 1)。
尽管制造商的使用说明中未描述,但我们建议在报告前对 BioFire GI 面板的熔解曲线进行常规手动审查,以减轻潜在的假阳性诺如病毒结果。