Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, 25250, Vestec, Czech Republic.
Present address: Department of Cellular Biochemistry, University Medical Center Göttingen, D-37073, Göttingen, Germany.
BMC Biol. 2024 Jun 3;22(1):130. doi: 10.1186/s12915-024-01928-8.
Hydrogenosomes are a specific type of mitochondria that have adapted for life under anaerobiosis. Limited availability of oxygen has resulted in the loss of the membrane-associated respiratory chain, and consequently in the generation of minimal inner membrane potential (Δψ), and inefficient ATP synthesis via substrate-level phosphorylation. The changes in energy metabolism are directly linked with the organelle biogenesis. In mitochondria, proteins are imported across the outer membrane via the Translocase of the Outer Membrane (TOM complex), while two Translocases of the Inner Membrane, TIM22, and TIM23, facilitate import to the inner membrane and matrix. TIM23-mediated steps are entirely dependent on Δψ and ATP hydrolysis, while TIM22 requires only Δψ. The character of the hydrogenosomal inner membrane translocase and the mechanism of translocation is currently unknown.
We report unprecedented modification of TIM in hydrogenosomes of the human parasite Trichomonas vaginalis (TvTIM). We show that the import of the presequence-containing protein into the hydrogenosomal matrix is mediated by the hybrid TIM22-TIM23 complex that includes three highly divergent core components, TvTim22, TvTim23, and TvTim17-like proteins. The hybrid character of the TvTIM is underlined by the presence of both TvTim22 and TvTim17/23, association with small Tim chaperones (Tim9-10), which in mitochondria are known to facilitate the transfer of substrates to the TIM22 complex, and the coupling with TIM23-specific ATP-dependent presequence translocase-associated motor (PAM). Interactome reconstruction based on co-immunoprecipitation (coIP) and mass spectrometry revealed that hybrid TvTIM is formed with the compositional variations of paralogs. Single-particle electron microscopy for the 132-kDa purified TvTIM revealed the presence of a single ring of small Tims complex, while mitochondrial TIM22 complex bears twin small Tims hexamer. TvTIM is currently the only TIM visualized outside of Opisthokonta, which raised the question of which form is prevailing across eukaryotes. The tight association of the hybrid TvTIM with ADP/ATP carriers (AAC) suggests that AAC may directly supply ATP for the protein import since ATP synthesis is limited in hydrogenosomes.
The hybrid TvTIM in hydrogenosomes represents an original structural solution that evolved for protein import when Δψ is negligible and remarkable example of evolutionary adaptation to an anaerobic lifestyle.
氢化酶体是一种适应无氧生活的特殊类型的线粒体。由于氧气有限,与呼吸链相关的膜结合部分被丢失,导致内膜电位(Δψ)极小,以及通过底物水平磷酸化进行低效的 ATP 合成。能量代谢的变化与细胞器的生物发生直接相关。在线粒体中,蛋白质通过外膜转位酶(TOM 复合物)穿过外膜,而两个内膜转位酶,TIM22 和 TIM23,促进向内膜和基质的输入。TIM23 介导的步骤完全依赖于 Δψ 和 ATP 水解,而 TIM22 只需要 Δψ。氢化酶体内膜转位酶的特性和转位机制目前尚不清楚。
我们报告了人类寄生虫阴道毛滴虫(TvTIM)氢化酶体中 TIM 前所未有的修饰。我们表明,前导序列包含蛋白进入氢化酶体基质的输入是由包含三个高度分化的核心成分的杂交 TIM22-TIM23 复合物介导的,TvTim22、TvTim23 和 TvTim17 样蛋白。TvTIM 的杂交特征由 TvTim22 和 TvTim17/23 的存在、与小 Tim 伴侣(Tim9-10)的关联,以及与 TIM23 特异性的 ATP 依赖性前导序列转运相关马达(PAM)的关联所强调,在这些线粒体中,已知这些伴侣有助于将底物转移到 TIM22 复合物中。基于免疫共沉淀(coIP)和质谱的相互作用组重建揭示了杂交 TvTIM 的形成是由平行物的组成变异引起的。对 132 kDa 纯化的 TvTIM 进行单颗粒电子显微镜观察显示,存在一个单一的小 Tim 复合物环,而线粒体 TIM22 复合物则带有双小 Tim 六聚体。TvTIM 是目前在后生动物之外可视化的唯一 TIM,这引发了一个问题,即在真核生物中哪种形式更为普遍。杂交 TvTIM 与 ADP/ATP 载体(AAC)的紧密关联表明,由于氢化酶体中 ATP 合成有限,AAC 可能直接为蛋白质输入提供 ATP。
氢化酶体中的杂交 TvTIM 代表了一种原始的结构解决方案,它是为当 Δψ 可以忽略不计且显著的适应无氧生活的进化时为蛋白质输入而进化的。