Department of Hematology, Affiliated Hospital of Qingdao University, Qingdao, Shandong, China.
Department of Clinical Laboratory, Affiliated Hospital of Qingdao University, Qingdao, Shandong, China.
Int J Lab Hematol. 2024 Oct;46(5):899-909. doi: 10.1111/ijlh.14319. Epub 2024 Jun 2.
The purpose of this study was to investigate the effects and potential mechanisms of ferroptosis-related gene heat shock protein beta-1 (HSPB1) on acute myeloid leukemia (AML).
The RNA-seq and clinical data of AML samples were obtained from the Genomic Data Commons database, and the FerrDb database was used to screen the marker, drive and suppressor of ferroptosis. Besides, DESeq2 was applied for differential expression analysis on AML samples and screening for differentially expressed genes (DEGs). The screened DEGs were subjected to the intersection analysis with ferroptosis-related genes to identify the ferroptosis-related DEGs. Next, the functional pathways of ferroptosis-related DEGs were further be discussed by Gene Ontology as well as Kyoto Encyclopedia of Genes and Genomes enrichment analysis of DEGs. Additionally, lasso regression analysis was employed to determine the differential genes related to prognosis in patients with AML and the survival analysis was performed. Subsequently, quantitative real-time polymerase chain reaction and western blot assay were applied to detect the mRNA and protein expression levels of HSPB1 in normal/AML bone marrow tissues and human normal (HS-5)/AML (HL-60) bone marrow cells, respectively. Furthermore, HSPB1 was knocked down to assess the expression changes of glutathione peroxidase 4 and acyl-CoA synthetase long-chain family member 4. Ultimately, the viability and oxidative stress levels of HL-60 were analyzed by Cell Counting Kit-8 and biochemical detection.
A total of 4986 DEGs were identified in AML samples, with 3324 up-regulated and 1662 down-regulated. The enrichment analysis illustrated that ferroptosis-related DEGs were significantly enriched in response to metal irons, oxidative stress, and other pathways. After lasso regression analysis, 17 feature genes related to the prognosis of patients with AML were obtained, with HSPB1 exhibiting a significant correlation. The reliability of our models was verified by Cox regression analysis and survival analysis of the hazard model. Furthermore, the outcomes of quantitative real-time polymerase chain reaction and western blot showed that mRNA and protein expression levels of HSPB1 were significantly increased in the AML Group and HL-60 cells. The knockdown of HSPB1 in HL-60 cells reduced the protein level of glutathione peroxidase 4, increased the protein level of acyl-CoA synthetase long-chain family member 4, decreased the cell viability, and aggravated oxidative stress.
Ferroptosis-related gene HSPB1 is highly expressed in patients with AML. In addition, HSPB1 may be involved in the occurrence and development of AML by regulating oxidative stress and ferroptosis-related pathways. This study provides new clues for further understanding of AML molecular mechanisms. Also, HSPB1 is expected to be a potential therapeutic target for AML in the future.
本研究旨在探讨铁死亡相关基因热休克蛋白β-1(HSPB1)对急性髓系白血病(AML)的作用及潜在机制。
从基因组数据共享数据库中获取 AML 样本的 RNA-seq 和临床数据,并使用 FerrDb 数据库筛选铁死亡的标志物、驱动基因和抑制基因。此外,应用 DESeq2 对 AML 样本进行差异表达分析,并筛选差异表达基因(DEGs)。对筛选出的 DEGs 与铁死亡相关基因进行交集分析,以确定铁死亡相关 DEGs。然后,通过基因本体论对铁死亡相关 DEGs 的功能途径进行进一步讨论,以及对 DEGs 的京都基因与基因组百科全书富集分析。此外,采用lasso 回归分析确定 AML 患者预后相关的差异基因,并进行生存分析。随后,采用实时定量聚合酶链反应和 Western blot 检测正常/AML 骨髓组织和人正常(HS-5)/AML(HL-60)骨髓细胞中 HSPB1 的 mRNA 和蛋白表达水平。进一步敲低 HSPB1,检测谷胱甘肽过氧化物酶 4 和长链酰基辅酶 A 合成酶家族成员 4 的表达变化。最后,通过细胞计数试剂盒-8 和生化检测分析 HL-60 的活力和氧化应激水平。
在 AML 样本中鉴定出 4986 个差异表达基因,其中 3324 个上调,1662 个下调。富集分析表明,铁死亡相关 DEGs 显著富集于对金属铁、氧化应激等途径的反应。经过 lasso 回归分析,得到 17 个与 AML 患者预后相关的特征基因,其中 HSPB1 相关性显著。Cox 回归分析和危险模型的生存分析验证了我们模型的可靠性。此外,实时定量聚合酶链反应和 Western blot 的结果表明,AML 组和 HL-60 细胞中 HSPB1 的 mRNA 和蛋白表达水平均显著升高。HL-60 细胞中 HSPB1 的敲低降低了谷胱甘肽过氧化物酶 4 的蛋白水平,增加了长链酰基辅酶 A 合成酶家族成员 4 的蛋白水平,降低了细胞活力,并加重了氧化应激。
铁死亡相关基因 HSPB1 在 AML 患者中高表达。此外,HSPB1 可能通过调节氧化应激和铁死亡相关途径参与 AML 的发生和发展。本研究为进一步了解 AML 分子机制提供了新线索。同时,HSPB1 有望成为未来 AML 的潜在治疗靶点。