Seasock Matthew J, Shafiquzzaman Md, Ruiz-Echartea Maria E, Kanchi Rupa S, Tran Brandon T, Simon Lukas M, Meyer Matthew D, Erice Phillip A, Lotlikar Shivani L, Wenlock Stephanie C, Ochsner Scott A, Enright Anton, Carisey Alex F, Romero Freddy, Rosas Ivan O, King Katherine Y, McKenna Neil J, Coarfa Cristian, Rodriguez Antony
Immunology & Microbiology Graduate Program, Baylor College of Medicine, Houston, TX, 77030.
Department of Medicine, Section of Immunology, Allergy & Rheumatology, Baylor College of Medicine Houston TX, 77030.
bioRxiv. 2025 Feb 11:2024.05.22.595205. doi: 10.1101/2024.05.22.595205.
Analysis of lung alveolar type 2 (AT2) progenitor stem cells has highlighted fundamental mechanisms that direct their differentiation into alveolar type 1 cells (AT1s) in lung repair and disease. However, microRNA (miRNA) mediated post-transcriptional mechanisms which govern this nexus remain understudied. We show here that the miRNA family serves a homeostatic role in governance of AT2 quiescence, specifically by preventing the uncontrolled accumulation of AT2 transitional cells and by promoting AT1 differentiation. Using mice and organoid models, we demonstrate genetic ablation of cluster () in AT2 cells prevents AT1 differentiation and results in accumulation of AT2 transitional cells in progressive pulmonary fibrosis. Integration of AGO2-eCLIP with RNA-sequencing from AT2 cells uncovered the induction of direct targets of in an oncogene feed-forward regulatory network including BACH1/EZH2/MYC which drives an aberrant fibrotic cascade. Additional analyses using CUT&RUN-sequencing revealed an epigenetic role of in induction of chromatin histone acetylation and methylation and maladaptive AT2 cell reprogramming. This study identifies as a key gatekeeper of post-transcriptional and epigenetic chromatin signals to prevent AT2-driven pulmonary fibrosis.
对肺泡2型(AT2)祖干细胞的分析突出了在肺修复和疾病中指导其分化为肺泡1型细胞(AT1)的基本机制。然而,调控这一联系的微小RNA(miRNA)介导的转录后机制仍未得到充分研究。我们在此表明,该miRNA家族在AT2静止状态的调控中发挥着稳态作用,具体表现为防止AT2过渡细胞的不受控制积累以及促进AT1分化。利用小鼠和类器官模型,我们证明AT2细胞中簇()的基因消融会阻止AT1分化,并导致进行性肺纤维化中AT2过渡细胞的积累。将AGO2-eCLIP与来自AT2细胞的RNA测序相结合,揭示了在包括BACH1/EZH2/MYC在内的致癌基因前馈调节网络中直接靶标的诱导,该网络驱动异常的纤维化级联反应。使用CUT&RUN测序的进一步分析揭示了在染色质组蛋白乙酰化和甲基化诱导以及适应性不良的AT2细胞重编程中的表观遗传作用。这项研究确定为转录后和表观遗传染色质信号的关键守门人,以防止AT2驱动的肺纤维化。