Drisko Cody R, Gezelter J Daniel
Department of Chemistry and Biochemistry, University of Notre Dame, 251 Nieuwland Science Hall, Notre Dame, Indiana 46556, United States.
J Chem Theory Comput. 2024 Jun 25;20(12):4986-4997. doi: 10.1021/acs.jctc.4c00182. Epub 2024 Jun 4.
We present a new method for introducing stable nonequilibrium concentration gradients in molecular dynamics simulations of mixtures. This method extends earlier reverse nonequilibrium molecular dynamics (RNEMD) methods, which use kinetic energy scaling moves to create temperature or velocity gradients. In the new scaled particle flux (SPF-RNEMD) algorithm, energies and forces are computed simultaneously for a molecule existing in two nonadjacent regions of a simulation box, and the system evolves under a linear combination of these interactions. A continuously increasing particle scaling variable is responsible for the migration of the molecule between the regions as the simulation progresses, allowing for simulations under an applied particle flux. To test the method, we investigate diffusivity in mixtures of identical but distinguishable particles and in a simple mixture of multiple Lennard-Jones particles. The resulting concentration gradients provide Fick diffusion constants for mixtures. We also discuss using the new method to obtain coupled transport properties using simultaneous particle and thermal fluxes to compute the temperature dependence of the diffusion coefficient and activation energies for diffusion from a single simulation. Lastly, we demonstrate the use of this new method in interfacial systems by computing the diffusive permeability of a molecular fluid moving through a nanoporous graphene membrane.